- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.65 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- 4 x PEP: PHOSPHOENOLPYRUVATE(Non-functional Binders)
PEP.2: 13 residues within 4Å:- Chain A: R.136, K.143, E.258, W.290, G.292, E.293, R.294, K.316, R.347, D.376, H.379, D.451
- Ligands: MN.1
11 PLIP interactions:11 interactions with chain A- Hydrogen bonds: A:E.293
- Water bridges: A:R.294, A:R.294
- Salt bridges: A:R.136, A:K.143, A:R.294, A:K.316, A:K.316, A:R.347, A:H.379, A:H.379
PEP.14: 13 residues within 4Å:- Chain B: R.136, K.143, E.258, W.290, G.292, E.293, R.294, K.316, R.347, D.376, H.379, D.451
- Ligands: MN.13
11 PLIP interactions:11 interactions with chain B- Hydrogen bonds: B:E.293
- Water bridges: B:R.294, B:R.294
- Salt bridges: B:R.136, B:K.143, B:R.294, B:K.316, B:K.316, B:R.347, B:H.379, B:H.379
PEP.26: 13 residues within 4Å:- Chain C: R.136, K.143, E.258, W.290, G.292, E.293, R.294, K.316, R.347, D.376, H.379, D.451
- Ligands: MN.25
11 PLIP interactions:11 interactions with chain C- Hydrogen bonds: C:E.293
- Water bridges: C:R.294, C:R.294
- Salt bridges: C:R.136, C:K.143, C:R.294, C:K.316, C:K.316, C:R.347, C:H.379, C:H.379
PEP.38: 13 residues within 4Å:- Chain D: R.136, K.143, E.258, W.290, G.292, E.293, R.294, K.316, R.347, D.376, H.379, D.451
- Ligands: MN.37
11 PLIP interactions:11 interactions with chain D- Hydrogen bonds: D:E.293
- Water bridges: D:R.294, D:R.294
- Salt bridges: D:R.136, D:K.143, D:R.294, D:K.316, D:K.316, D:R.347, D:H.379, D:H.379
- 4 x TRP: TRYPTOPHAN(Non-covalent)
TRP.3: 14 residues within 4Å:- Chain A: L.117, A.120, V.121, T.124, K.133, A.202, L.204, L.207, S.247, L.248, A.250, A.251
- Chain C: C.241
- Ligands: TRS.12
9 PLIP interactions:7 interactions with chain A, 2 Ligand-Ligand interactions- Hydrophobic interactions: A:A.120, A:L.204, A:L.207
- Hydrogen bonds: A:A.202, A:S.247, W.3, W.3
- Salt bridges: A:K.133
- pi-Cation interactions: A:K.133
TRP.15: 14 residues within 4Å:- Chain B: L.117, A.120, V.121, T.124, K.133, A.202, L.204, L.207, S.247, L.248, A.250, A.251
- Chain D: C.241
- Ligands: TRS.24
9 PLIP interactions:7 interactions with chain B, 2 Ligand-Ligand interactions- Hydrophobic interactions: B:A.120, B:L.204, B:L.207
- Hydrogen bonds: B:A.202, B:S.247, W.15, W.15
- Salt bridges: B:K.133
- pi-Cation interactions: B:K.133
TRP.27: 14 residues within 4Å:- Chain A: C.241
- Chain C: L.117, A.120, V.121, T.124, K.133, A.202, L.204, L.207, S.247, L.248, A.250, A.251
- Ligands: TRS.36
9 PLIP interactions:7 interactions with chain C, 2 Ligand-Ligand interactions- Hydrophobic interactions: C:A.120, C:L.204, C:L.207
- Hydrogen bonds: C:A.202, C:S.247, W.27, W.27
- Salt bridges: C:K.133
- pi-Cation interactions: C:K.133
TRP.39: 14 residues within 4Å:- Chain B: C.241
- Chain D: L.117, A.120, V.121, T.124, K.133, A.202, L.204, L.207, S.247, L.248, A.250, A.251
- Ligands: TRS.48
9 PLIP interactions:7 interactions with chain D, 2 Ligand-Ligand interactions- Hydrophobic interactions: D:A.120, D:L.204, D:L.207
- Hydrogen bonds: D:A.202, D:S.247, W.39, W.39
- Salt bridges: D:K.133
- pi-Cation interactions: D:K.133
- 20 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.4: 5 residues within 4Å:- Chain A: I.40, S.41, R.42, A.44
- Ligands: MPD.8
Ligand excluded by PLIPMPD.5: 3 residues within 4Å:- Chain A: R.409, A.410, G.412
Ligand excluded by PLIPMPD.6: 2 residues within 4Å:- Chain A: T.49, L.149
Ligand excluded by PLIPMPD.7: 2 residues within 4Å:- Chain A: R.354, E.406
Ligand excluded by PLIPMPD.8: 6 residues within 4Å:- Chain A: P.48, W.50, R.52, V.262, D.263
- Ligands: MPD.4
Ligand excluded by PLIPMPD.16: 5 residues within 4Å:- Chain B: I.40, S.41, R.42, A.44
- Ligands: MPD.20
Ligand excluded by PLIPMPD.17: 3 residues within 4Å:- Chain B: R.409, A.410, G.412
Ligand excluded by PLIPMPD.18: 2 residues within 4Å:- Chain B: T.49, L.149
Ligand excluded by PLIPMPD.19: 2 residues within 4Å:- Chain B: R.354, E.406
Ligand excluded by PLIPMPD.20: 6 residues within 4Å:- Chain B: P.48, W.50, R.52, V.262, D.263
- Ligands: MPD.16
Ligand excluded by PLIPMPD.28: 5 residues within 4Å:- Chain C: I.40, S.41, R.42, A.44
- Ligands: MPD.32
Ligand excluded by PLIPMPD.29: 3 residues within 4Å:- Chain C: R.409, A.410, G.412
Ligand excluded by PLIPMPD.30: 2 residues within 4Å:- Chain C: T.49, L.149
Ligand excluded by PLIPMPD.31: 2 residues within 4Å:- Chain C: R.354, E.406
Ligand excluded by PLIPMPD.32: 6 residues within 4Å:- Chain C: P.48, W.50, R.52, V.262, D.263
- Ligands: MPD.28
Ligand excluded by PLIPMPD.40: 5 residues within 4Å:- Chain D: I.40, S.41, R.42, A.44
- Ligands: MPD.44
Ligand excluded by PLIPMPD.41: 3 residues within 4Å:- Chain D: R.409, A.410, G.412
Ligand excluded by PLIPMPD.42: 2 residues within 4Å:- Chain D: T.49, L.149
Ligand excluded by PLIPMPD.43: 2 residues within 4Å:- Chain D: R.354, E.406
Ligand excluded by PLIPMPD.44: 6 residues within 4Å:- Chain D: P.48, W.50, R.52, V.262, D.263
- Ligands: MPD.40
Ligand excluded by PLIP- 4 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
PGE.9: 7 residues within 4Å:- Chain A: E.73, R.194, T.197, D.252, I.253, Y.254, H.287
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:T.197, A:T.197, A:I.253
PGE.21: 7 residues within 4Å:- Chain B: E.73, R.194, T.197, D.252, I.253, Y.254, H.287
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:T.197, B:T.197, B:I.253
PGE.33: 7 residues within 4Å:- Chain C: E.73, R.194, T.197, D.252, I.253, Y.254, H.287
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:T.197, C:I.253
PGE.45: 7 residues within 4Å:- Chain D: E.73, R.194, T.197, D.252, I.253, Y.254, H.287
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:T.197, D:I.253
- 8 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.10: 4 residues within 4Å:- Chain A: R.181, A.184, N.185
- Chain B: I.180
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.185
PO4.11: 5 residues within 4Å:- Chain A: S.307, M.308, I.309, S.310, R.341
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:I.309
- Salt bridges: A:R.341
PO4.22: 4 residues within 4Å:- Chain A: I.180
- Chain B: R.181, A.184, N.185
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.185
PO4.23: 5 residues within 4Å:- Chain B: S.307, M.308, I.309, S.310, R.341
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:I.309
- Salt bridges: B:R.341
PO4.34: 4 residues within 4Å:- Chain C: R.181, A.184, N.185
- Chain D: I.180
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:N.185
PO4.35: 5 residues within 4Å:- Chain C: S.307, M.308, I.309, S.310, R.341
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:I.309
- Salt bridges: C:R.341
PO4.46: 4 residues within 4Å:- Chain C: I.180
- Chain D: R.181, A.184, N.185
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:N.185
PO4.47: 5 residues within 4Å:- Chain D: S.307, M.308, I.309, S.310, R.341
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:I.309
- Salt bridges: D:R.341
- 4 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
TRS.12: 3 residues within 4Å:- Chain A: A.250, D.252
- Ligands: TRP.3
3 PLIP interactions:1 interactions with chain A, 2 Ligand-Ligand interactions- Hydrogen bonds: A:D.252, W.3, W.3
TRS.24: 3 residues within 4Å:- Chain B: A.250, D.252
- Ligands: TRP.15
3 PLIP interactions:1 interactions with chain B, 2 Ligand-Ligand interactions- Hydrogen bonds: B:D.252, W.15, W.15
TRS.36: 3 residues within 4Å:- Chain C: A.250, D.252
- Ligands: TRP.27
3 PLIP interactions:2 Ligand-Ligand interactions, 1 interactions with chain C- Hydrogen bonds: W.27, W.27, C:D.252
TRS.48: 3 residues within 4Å:- Chain D: A.250, D.252
- Ligands: TRP.39
3 PLIP interactions:1 interactions with chain D, 2 Ligand-Ligand interactions- Hydrogen bonds: D:D.252, W.39, W.39
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Burschowsky, D. et al., Inter-Enzyme Allosteric Regulation of Chorismate Mutase in Corynebacterium glutamicum: Structural Basis of Feedback Activation by Trp. Biochemistry (2018)
- Release Date
- 2017-08-02
- Peptides
- 3-Deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.65 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- 4 x PEP: PHOSPHOENOLPYRUVATE(Non-functional Binders)
- 4 x TRP: TRYPTOPHAN(Non-covalent)
- 20 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 4 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 8 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Burschowsky, D. et al., Inter-Enzyme Allosteric Regulation of Chorismate Mutase in Corynebacterium glutamicum: Structural Basis of Feedback Activation by Trp. Biochemistry (2018)
- Release Date
- 2017-08-02
- Peptides
- 3-Deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A