SMTL ID : 5huf.1

The crystal structure of hemagglutinin from A/gyrfalcon/Washington/41088-6/2014 influenza virus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.81 Å

Oligo State

hetero-3-3-mer

Ligands

3 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN.1: 4 residues within 4Å: Chain A: N.170, N.241, A.243 Chain C: S.222 No protein-ligand interaction detected (PLIP) NAG-NAG-MAN.3: 2 residues within 4Å: Chain C: N.170, N.241 No protein-ligand interaction detected (PLIP) NAG-NAG-MAN.5: 4 residues within 4Å: Chain E: N.170, N.241, D.242, A.243 No protein-ligand interaction detected (PLIP)

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 4 residues within 4Å: Chain B: E.147, E.150, N.154, T.156 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.147 NAG-NAG.4: 5 residues within 4Å: Chain D: E.147, E.150, S.151, N.154, T.156 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:E.147 NAG-NAG.6: 5 residues within 4Å: Chain F: E.147, E.150, S.151, N.154, T.156 1 PLIP interactions: 1 interactions with chain F Hydrophobic interactions: F:E.147

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 1 residues within 4Å: Chain A: N.28 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.28 NAG.8: 2 residues within 4Å: Chain A: N.280, N.291 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.291 NAG.9: 2 residues within 4Å: Chain C: Q.20, N.28 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.28 NAG.10: 2 residues within 4Å: Chain C: N.280, N.291 No protein-ligand interaction detected (PLIP) NAG.11: 1 residues within 4Å: Chain E: N.28 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.28 NAG.12: 1 residues within 4Å: Chain E: N.291 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.291

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, H. et al., Molecular Characterizations of Surface Proteins Hemagglutinin and Neuraminidase from Recent H5Nx Avian Influenza Viruses. J.Virol. (2016)

Release Date

2016-04-13

Peptides

hemagglutinin HA1: ACE
hemagglutinin HA2: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

hemagglutinin HA1

hemagglutinin HA2