- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
- 4 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG-FUC.2: 3 residues within 4Å:- Chain A: N.74, T.76, I.364
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:I.364
NAG-FUC.7: 3 residues within 4Å:- Chain B: N.74, T.76, I.364
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:I.364
NAG-FUC.12: 3 residues within 4Å:- Chain C: N.74, T.76, I.364
1 PLIP interactions:1 interactions with chain C- Hydrophobic interactions: C:I.364
NAG-FUC.17: 3 residues within 4Å:- Chain D: N.74, T.76, I.364
1 PLIP interactions:1 interactions with chain D- Hydrophobic interactions: D:I.364
- 8 x CA: CALCIUM ION(Non-covalent)
CA.3: 4 residues within 4Å:- Chain A: D.304, N.306, D.312, S.314
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.304, A:D.312, A:S.314, H2O.1, H2O.5
CA.4: 6 residues within 4Å:- Chain A: D.222, G.226, D.252, G.270, Y.272, G.273
6 PLIP interactions:5 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.222, A:G.226, A:D.252, A:G.270, A:Y.272, H2O.2
CA.8: 4 residues within 4Å:- Chain B: D.304, N.306, D.312, S.314
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.304, B:D.312, B:S.314, H2O.7, H2O.11
CA.9: 6 residues within 4Å:- Chain B: D.222, G.226, D.252, G.270, Y.272, G.273
6 PLIP interactions:5 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.222, B:G.226, B:D.252, B:G.270, B:Y.272, H2O.8
CA.13: 4 residues within 4Å:- Chain C: D.304, N.306, D.312, S.314
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:D.304, C:D.312, C:S.314, H2O.14, H2O.18
CA.14: 6 residues within 4Å:- Chain C: D.222, G.226, D.252, G.270, Y.272, G.273
6 PLIP interactions:5 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.222, C:G.226, C:D.252, C:G.270, C:Y.272, H2O.15
CA.18: 4 residues within 4Å:- Chain D: D.304, N.306, D.312, S.314
5 PLIP interactions:3 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:D.304, D:D.312, D:S.314, H2O.20, H2O.24
CA.19: 6 residues within 4Å:- Chain D: D.222, G.226, D.252, G.270, Y.272, G.273
6 PLIP interactions:5 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.222, D:G.226, D:D.252, D:G.270, D:Y.272, H2O.21
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.5: 2 residues within 4Å:- Chain A: N.163
- Ligands: NAG-NAG-FUC.1
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.163
NAG.10: 2 residues within 4Å:- Chain B: N.163
- Ligands: NAG-NAG-FUC.6
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.163
NAG.15: 2 residues within 4Å:- Chain C: N.163
- Ligands: NAG-NAG-FUC.11
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:N.163
NAG.20: 2 residues within 4Å:- Chain D: N.163
- Ligands: NAG-NAG-FUC.16
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:N.163
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yang, H. et al., Molecular Characterizations of Surface Proteins Hemagglutinin and Neuraminidase from Recent H5Nx Avian Influenza Viruses. J.Virol. (2016)
- Release Date
- 2016-04-13
- Peptides
- neuraminidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
- 4 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 8 x CA: CALCIUM ION(Non-covalent)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yang, H. et al., Molecular Characterizations of Surface Proteins Hemagglutinin and Neuraminidase from Recent H5Nx Avian Influenza Viruses. J.Virol. (2016)
- Release Date
- 2016-04-13
- Peptides
- neuraminidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A