SMTL ID : 5hwm.1

Crystal structure of keto-deoxy-D-galactarate dehydratase complexed with 2-oxoadipic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-tetramer

Ligands

4 x OOG: 2-OXOADIPIC ACID(Covalent)

OOG.1: 14 residues within 4Å: Chain A: F.17, G.52, G.53, T.54, L.108, L.110, Y.140, R.142, K.166, G.191, P.193, A.213, A.259, V.260 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.140, A:K.166 Hydrogen bonds: A:G.53, A:T.54, A:R.142 Salt bridges: A:K.166 OOG.2: 14 residues within 4Å: Chain B: F.17, G.52, G.53, T.54, L.108, L.110, Y.140, K.166, G.191, P.193, S.211, A.213, A.259, V.260 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:F.17, B:K.166 Hydrogen bonds: B:G.53, B:T.54, B:T.54, B:T.54 Water bridges: B:R.142, B:T.194 Salt bridges: B:K.166 OOG.3: 13 residues within 4Å: Chain C: F.17, G.52, G.53, T.54, L.108, L.110, Y.140, K.166, G.191, P.193, S.211, S.212, A.213 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:F.17, C:F.17, C:K.166 Hydrogen bonds: C:G.53, C:T.54, C:T.54, C:T.54 Water bridges: C:A.213 Salt bridges: C:K.166 OOG.5: 16 residues within 4Å: Chain D: F.17, G.52, G.53, T.54, L.108, L.110, Y.140, K.166, G.191, M.192, P.193, T.194, A.195, S.211, S.212, A.213 10 PLIP interactions: 10 interactions with chain D Hydrophobic interactions: D:F.17, D:K.166 Hydrogen bonds: D:G.53, D:T.54, D:T.54, D:T.194, D:A.195, D:S.211, D:A.213 Salt bridges: D:K.166

2 x FMT: FORMIC ACID(Non-functional Binders)

FMT.4: 7 residues within 4Å: Chain C: G.53, F.58, R.142, P.193, A.259, V.260 Chain D: I.115 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:R.142 FMT.6: 5 residues within 4Å: Chain C: I.115 Chain D: G.53, F.58, R.142, V.260 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:G.53, D:R.142, D:R.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Taberman, H. et al., Structure and function of a decarboxylating Agrobacterium tumefaciens keto-deoxy-d-galactarate dehydratase. Biochemistry (2014)

Release Date

2016-03-23

Peptides

Probable 5-dehydro-4-deoxyglucarate dehydratase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Probable 5-dehydro-4-deoxyglucarate dehydratase

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