SMTL ID : 5hxa.1

Crystal structure of an UDP-forming alpha, alpha-terhalose-phosphate synthase from Burkholderia xenovorans

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

20 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: R.79, Q.83, Q.109 Ligand excluded by PLIP EDO.2: 4 residues within 4Å: Chain A: D.250, R.251, K.252, R.255 Ligand excluded by PLIP EDO.3: 3 residues within 4Å: Chain A: Q.396, A.401, V.409 Ligand excluded by PLIP EDO.4: 3 residues within 4Å: Chain A: S.256, R.347, Y.349 Ligand excluded by PLIP EDO.5: 2 residues within 4Å: Chain A: R.424, E.432 Ligand excluded by PLIP EDO.6: 2 residues within 4Å: Chain A: L.291, R.333 Ligand excluded by PLIP EDO.7: 1 residues within 4Å: Chain A: R.333 Ligand excluded by PLIP EDO.8: 2 residues within 4Å: Chain A: G.30, R.351 Ligand excluded by PLIP EDO.9: 3 residues within 4Å: Chain A: T.77, K.78, R.79 Ligand excluded by PLIP EDO.10: 3 residues within 4Å: Chain A: D.454, T.455, A.458 Ligand excluded by PLIP EDO.14: 3 residues within 4Å: Chain B: R.79, Q.83, Q.109 Ligand excluded by PLIP EDO.15: 4 residues within 4Å: Chain B: D.250, R.251, K.252, R.255 Ligand excluded by PLIP EDO.16: 3 residues within 4Å: Chain B: Q.396, A.401, V.409 Ligand excluded by PLIP EDO.17: 3 residues within 4Å: Chain B: S.256, R.347, Y.349 Ligand excluded by PLIP EDO.18: 2 residues within 4Å: Chain B: R.424, E.432 Ligand excluded by PLIP EDO.19: 2 residues within 4Å: Chain B: L.291, R.333 Ligand excluded by PLIP EDO.20: 1 residues within 4Å: Chain B: R.333 Ligand excluded by PLIP EDO.21: 2 residues within 4Å: Chain B: G.30, R.351 Ligand excluded by PLIP EDO.22: 3 residues within 4Å: Chain B: T.77, K.78, R.79 Ligand excluded by PLIP EDO.23: 3 residues within 4Å: Chain B: D.454, T.455, A.458 Ligand excluded by PLIP

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.11: 4 residues within 4Å: Chain A: R.108, Q.109 Chain B: R.288, S.416 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:S.416, B:S.416, A:R.108, A:Q.109 Water bridges: A:R.108 GOL.24: 4 residues within 4Å: Chain A: R.288, S.416 Chain B: R.108, Q.109 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:R.108, B:Q.109, A:S.416, A:S.416 Water bridges: B:R.108, A:E.420

4 x NA: SODIUM ION(Non-functional Binders)

NA.12: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) NA.13: 1 residues within 4Å: Chain A: D.388 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.388 NA.25: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) NA.26: 1 residues within 4Å: Chain B: D.388 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.388, B:D.388

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mayclin, S.J. et al., Crystal structure of an UDP-forming alpha, alpha-terhalose-phosphate synthase from Burkholderia xenovorans. to be published

Release Date

2016-02-10

Peptides

Alpha,alpha-trehalose-phosphate synthase (UDP-forming): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Alpha,alpha-trehalose-phosphate synthase (UDP-forming)