SMTL ID : 5hzh.1

Crystal structure of photoinhibitable Rac1 containing C450A mutant LOV2 domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.1: 23 residues within 4Å: Chain A: D.14, G.15, A.16, V.17, G.18, K.19, T.20, C.21, F.31, Y.35, I.36, P.37, T.38, T.210, A.211, G.212, K.268, D.270, L.271, S.310, A.311, L.312 Ligands: MG.3 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:D.14, A:A.16, A:V.17, A:G.18, A:K.19, A:T.20, A:T.20, A:C.21, A:Y.35, A:T.38, A:G.212, A:K.268, A:A.311, A:L.312 Water bridges: A:L.22, A:K.268 Salt bridges: A:K.19, A:K.19, A:D.270 pi-Stacking: A:F.31, A:F.31

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.2: 21 residues within 4Å: Chain A: V.66, T.68, N.75, N.99, A.100, R.101, L.103, Q.104, V.113, I.116, R.117, I.120, L.130, N.132, N.142, F.144, L.146, F.159, I.160, G.161, Q.163 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:V.66, A:T.68, A:I.120, A:F.144, A:L.146 Hydrogen bonds: A:N.99, A:N.99, A:A.100, A:A.100, A:Q.104, A:N.132, A:N.132, A:N.142, A:Q.163 Salt bridges: A:R.101, A:R.117

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: T.20, T.38, D.209 Ligands: GTP.1 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.20, H2O.1, H2O.1

2 x CA: CALCIUM ION(Non-covalent)

CA.4: 1 residues within 4Å: Chain A: D.215 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.215 CA.5: 1 residues within 4Å: Chain A: D.155 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dagliyan, O. et al., Engineering extrinsic disorder to control protein activity in living cells. Science (2016)

Release Date

2016-12-21

Peptides

Ras-related C3 botulinum toxin substrate 1,NPH1-1,Ras-related C3 botulinum toxin substrate 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ras-related C3 botulinum toxin substrate 1,NPH1-1,Ras-related C3 botulinum toxin substrate 1