SMTL ID : 5i0d.1 (1 other biounit)

Cycloalternan-forming enzyme from Listeria monocytogenes in complex with cycloalternan

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

monomer

Ligands

2 x GLC- GLC: alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 11 residues within 4Å: Chain A: D.770, N.773, G.775, H.777, S.784, Y.785, Y.786, E.944, F.945, T.953, T.963 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.773, A:Y.786, A:Y.786 Water bridges: A:S.784 GLC-GLC.3: 6 residues within 4Å: Chain A: A.414, T.415, Y.416, Y.468, E.469, Q.470 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.416, A:E.469, A:Q.470 Water bridges: A:Y.416, A:Y.416, A:Y.416, A:E.469

2 x GLC- GLC- GLC- GLC: Cyclic alpha-D-glucopyranose-(1-3)-alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose-(1-3)-alpha-D-glucopyranose

GLC-GLC-GLC-GLC.2: 9 residues within 4Å: Chain A: H.957, G.968, D.970, V.999, E.1000, W.1023, A.1052, G.1053, N.1055 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.957, A:N.1055, A:N.1055 GLC-GLC-GLC-GLC.4: 20 residues within 4Å: Chain A: N.273, Y.275, N.372, E.400, Q.401, E.405, Y.408, W.456, W.500, K.535, D.537, R.586, W.599, D.602, F.635, H.661, E.663 Ligands: GLC-GLC-GLC.5, GLC-GLC-GLC.5, GLC.14 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.535, A:D.537, A:R.586, A:D.602, A:H.661

1 x GLC- GLC- GLC: alpha-D-glucopyranose-(1-3)-alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose

GLC-GLC-GLC.5: 7 residues within 4Å: Chain A: Y.275, T.636, G.637, E.663, K.664 Ligands: GLC-GLC-GLC-GLC.4, GLC-GLC-GLC-GLC.4 No protein-ligand interaction detected (PLIP)

5 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.6: 1 residues within 4Å: Chain A: N.349 No protein-ligand interaction detected (PLIP) MG.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.8: 3 residues within 4Å: Chain A: E.373, D.375, D.379 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.373, A:D.375, A:D.379, H2O.29, H2O.30, H2O.35 MG.9: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.10: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x CA: CALCIUM ION(Non-covalent)

CA.11: 5 residues within 4Å: Chain A: E.942, E.944, T.961, G.964, D.1057 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.942, A:E.944, A:T.961, A:G.964, A:D.1057

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.12: 3 residues within 4Å: Chain A: N.273, Q.499, W.500 Ligand excluded by PLIP CL.13: 3 residues within 4Å: Chain A: F.113, Y.114, N.236 Ligand excluded by PLIP

1 x GLC: alpha-D-glucopyranose(Non-covalent)

GLC.14: 6 residues within 4Å: Chain A: Q.401, E.405, K.462, S.665 Ligands: GLC-GLC-GLC-GLC.4, GLC-GLC-GLC-GLC.4 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Q.401, A:K.462, A:K.462, A:S.665 Water bridges: A:Q.401, A:S.665, A:S.665

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Light, S.H. et al., Transferase Versus Hydrolase: The Role of Conformational Flexibility in Reaction Specificity. Structure (2017)

Release Date

2016-12-14

Peptides

Lmo2446 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lmo2446 protein

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