SMTL ID : 5i0h.2 (1 other biounit)

Crystal structure of myosin X motor domain in pre-powerstroke state

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 20 residues within 4Å: Chain A: I.92, N.104, P.105, Y.106, Q.107, Y.113, E.158, S.159, G.160, A.161, G.162, K.163, T.164, E.165, N.215, N.217 Ligands: MG.2, BEF.3, EDO.5, EDO.17 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:N.104, A:Y.106, A:Q.107, A:Y.113, A:Y.113, A:G.160, A:A.161, A:G.162, A:K.163, A:T.164, A:E.165, A:N.215 Water bridges: A:T.164, A:T.164, A:S.219, A:D.434 Salt bridges: A:K.163

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: T.164, S.219 Ligands: ADP.1, BEF.3 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.164, A:S.219, H2O.1, H2O.3

1 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)

BEF.3: 10 residues within 4Å: Chain A: S.159, G.160, K.163, N.215, S.218, S.219, F.436, G.437 Ligands: ADP.1, MG.2 No protein-ligand interaction detected (PLIP)

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 7 residues within 4Å: Chain A: L.244, L.245, E.246, F.436, E.447, N.450, I.451 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.244, A:E.447, A:N.450 Water bridges: A:K.247 EDO.5: 9 residues within 4Å: Chain A: S.102, V.103, N.104, A.161, G.162, E.165, S.166, C.636 Ligands: ADP.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.161, A:S.166 Water bridges: A:S.102, A:S.102 EDO.6: 5 residues within 4Å: Chain A: R.252, Q.392, D.396, D.399, E.562 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.252, A:R.252, A:Q.392, A:D.396 Water bridges: A:N.248 EDO.7: 4 residues within 4Å: Chain A: L.182, E.183, L.184, E.188 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.188 EDO.8: 8 residues within 4Å: Chain A: E.158, S.159, Y.214, F.438, E.439, N.440, K.638, M.641 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.158, A:F.438, A:N.440, A:K.638, A:K.638 EDO.9: 5 residues within 4Å: Chain A: Y.243, L.244, Q.614, F.615, S.618 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.244, A:S.618 Water bridges: A:D.242, A:S.618 EDO.10: 7 residues within 4Å: Chain A: S.156, G.157, R.635, C.636, I.637, Y.659, S.660 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.156, A:R.635, A:Y.659, A:Y.659 Water bridges: A:S.156, A:S.156, A:E.158, A:E.158 EDO.15: 6 residues within 4Å: Chain A: E.246, N.248, R.249, R.252, N.254, E.257 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.254, A:E.257 Water bridges: A:R.249, A:K.563, A:K.563 EDO.16: 2 residues within 4Å: Chain A: M.378, F.379 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.379 EDO.17: 3 residues within 4Å: Chain A: Y.113, E.165 Ligands: ADP.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.165

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.11: 6 residues within 4Å: Chain A: R.14, G.17, H.75, G.76, R.658, L.663 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.17, A:G.76 Water bridges: A:G.77, A:G.77 Salt bridges: A:R.14, A:R.658 SO4.12: 2 residues within 4Å: Chain A: R.14, G.17 2 PLIP interactions: 2 interactions with chain A Water bridges: A:G.17 Salt bridges: A:R.14 SO4.13: 2 residues within 4Å: Chain A: K.498, K.499 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.499 Water bridges: A:E.497, A:K.498 SO4.14: 3 residues within 4Å: Chain A: R.569, N.595, N.596 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.595, A:N.595, A:N.596 Water bridges: A:D.570, A:N.596, A:N.596

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ropars, V. et al., The myosin X motor is optimized for movement on actin bundles. Nat Commun (2016)

Release Date

2016-09-07

Peptides

Unconventional myosin-X: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Unconventional myosin-X

Related Entries With Identical Sequence