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SMTL ID : 5i1w.1
(1 other biounit)
Crystal structure of CrmK, a flavoenzyme involved in the shunt product recycling mechanism in caerulomycin biosynthesis
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.15 Å
Oligo State
homo-dimer
Ligands
2 x
FAD
:
FLAVIN-ADENINE DINUCLEOTIDE
(Covalent)
FAD.1:
32 residues within 4Å:
Chain A:
D.23
,
V.59
,
R.60
,
S.61
,
G.62
,
G.63
,
H.64
,
C.65
,
F.69
,
V.70
,
L.81
,
A.100
,
G.122
,
F.123
,
C.124
,
V.127
,
G.128
,
G.130
,
G.131
,
H.132
,
G.137
,
Y.138
,
G.191
,
G.192
,
G.195
,
V.196
,
I.197
,
I.328
,
Y.446
,
N.448
,
Y.449
Ligands:
67L.2
22
PLIP interactions
:
22 interactions with chain A
Hydrophobic interactions:
A:H.64
,
A:V.127
,
A:I.328
Hydrogen bonds:
A:V.59
,
A:S.61
,
A:S.61
,
A:G.62
,
A:G.63
,
A:H.64
,
A:C.65
,
A:F.123
,
A:G.128
,
A:G.128
,
A:G.131
,
A:H.132
,
A:Y.138
,
A:Y.138
,
A:G.192
,
A:I.197
,
A:I.197
,
A:N.448
,
A:N.448
FAD.3:
32 residues within 4Å:
Chain B:
D.23
,
V.59
,
R.60
,
S.61
,
G.62
,
G.63
,
H.64
,
C.65
,
F.69
,
V.70
,
L.81
,
A.100
,
G.122
,
F.123
,
C.124
,
V.127
,
G.128
,
G.130
,
G.131
,
H.132
,
G.137
,
Y.138
,
G.191
,
G.192
,
G.195
,
V.196
,
I.197
,
Y.446
,
N.448
,
Y.449
,
H.493
Ligands:
67L.4
23
PLIP interactions
:
23 interactions with chain B
Hydrophobic interactions:
B:H.64
,
B:V.127
Hydrogen bonds:
B:V.59
,
B:S.61
,
B:S.61
,
B:G.62
,
B:G.63
,
B:H.64
,
B:C.65
,
B:F.123
,
B:G.128
,
B:G.128
,
B:G.131
,
B:H.132
,
B:Y.138
,
B:Y.138
,
B:G.192
,
B:I.197
,
B:I.197
,
B:Y.446
,
B:N.448
,
B:N.448
,
B:H.493
2 x
67L
:
6-(hydroxymethyl)[2,2'-bipyridin]-4-ol
(Non-covalent)
67L.2:
9 residues within 4Å:
Chain A:
H.64
,
G.66
,
F.123
,
C.124
,
F.403
,
M.405
,
N.448
,
Y.449
Ligands:
FAD.1
3
PLIP interactions
:
3 interactions with chain A
Hydrophobic interactions:
A:F.403
,
A:F.403
Hydrogen bonds:
A:Y.449
67L.4:
9 residues within 4Å:
Chain B:
D.23
,
H.64
,
G.66
,
F.123
,
F.403
,
M.405
,
N.448
,
Y.449
Ligands:
FAD.3
2
PLIP interactions
:
2 interactions with chain B
Hydrogen bonds:
B:Y.449
,
B:Y.449
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Zhu, Y. et al., Biochemical and structural insights into flavoenzyme CrmK reveals a shunt product recycling mechanism in caerulomycin biosynthesis. to be published
Release Date
2017-02-15
Peptides
CrmK:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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5i1w.2
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