SMTL ID : 5i20.5 (5 other biounits)

Crystal structure of protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

6 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.1: 6 residues within 4Å: Chain A: L.96, L.100, L.103, L.126, F.143, F.145 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.96, A:L.100, A:L.103, A:L.126, A:F.143, A:F.145 OLC.2: 16 residues within 4Å: Chain A: W.17, L.20, L.35, T.36, T.39, F.40, Y.78, H.79, Y.82, F.83, W.101, C.159, W.163, P.220, V.221, F.225 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.17, A:W.17, A:L.20, A:F.40, A:Y.82, A:W.101, A:W.163, A:W.163, A:V.221, A:F.225 OLC.3: 6 residues within 4Å: Chain A: V.69, G.73, G.77, F.80, F.81 Ligands: OLC.5 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.69, A:F.80 OLC.4: 3 residues within 4Å: Chain A: F.108, F.111, R.172 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.108, A:F.108, A:F.111, A:F.111 Salt bridges: A:R.172 OLC.5: 7 residues within 4Å: Chain A: P.66, V.69, H.70, V.165, Y.166, F.173 Ligands: OLC.3 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.165 Hydrogen bonds: A:P.66 Salt bridges: A:H.70 OLC.6: 4 residues within 4Å: Chain A: S.4, T.7, F.11, L.239 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.11, A:L.239 Hydrogen bonds: A:S.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tsuchiya, H. et al., Structural basis for amino acid export by DMT superfamily transporter YddG. Nature (2016)

Release Date

2016-06-01

Peptides

Uncharacterized protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

Membrane

We predict this structure to be a membrane protein.
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Uncharacterized protein

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