SMTL ID : 5i2m.1

CRYSTAL STRUCTURE OF VSV-INDIANA (MUDD-SUMMERS STRAIN) GLYCOPROTEIN UNDER ITS ACIDIC CONFORMATION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-trimer

Ligands

5 x PE4: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL(Non-functional Binders)

PE4.1: 7 residues within 4Å: Chain A: K.220, W.227, F.245, A.246, R.249, F.250, E.252 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.220 Hydrogen bonds: A:K.220 PE4.2: 7 residues within 4Å: Chain B: K.220, W.227, F.245, A.246, R.249, F.250, E.252 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.220 PE4.3: 11 residues within 4Å: Chain B: I.339, L.340, S.341, R.342, V.344, R.375, T.376, S.377, S.378, G.379, Y.380 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.341 PE4.4: 9 residues within 4Å: Chain B: P.338, I.339, L.374, T.376, S.378, K.381, F.382, L.384 Chain C: H.33 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:P.338, B:I.339, B:L.384 Hydrogen bonds: B:K.381 PE4.5: 7 residues within 4Å: Chain C: K.220, W.227, F.245, A.246, R.249, F.250, E.252 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:K.220, C:R.249, C:E.252

1 x CA: CALCIUM ION(Non-covalent)

CA.6: 2 residues within 4Å: Chain C: D.192, E.194 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.192, C:E.194

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roche, S. et al., Crystal structure of the low-pH form of the vesicular stomatitis virus glycoprotein G. Science (2006)

Release Date

2016-02-24

Peptides

Glycoprotein G: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Glycoprotein G

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