SMTL ID : 5i38.1

Crystal Structure of tyrosinase from Bacillus megaterium with inhibitor kojic acid in the active site

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

4 x CU: COPPER (II) ION(Non-covalent)

CU.1: 5 residues within 4Å: Chain A: H.201, H.205, F.224, H.228 Ligands: KOJ.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.201, A:H.205, A:H.228, H2O.1 CU.2: 5 residues within 4Å: Chain A: H.39, H.57, H.66, F.224 Ligands: KOJ.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.39, A:H.57, A:H.66, H2O.1 CU.4: 5 residues within 4Å: Chain B: H.39, H.57, H.66, F.224 Ligands: KOJ.6 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.39, B:H.57, B:H.66, H2O.2 CU.5: 5 residues within 4Å: Chain B: H.201, H.205, F.224, H.228 Ligands: KOJ.6 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.201, B:H.205, B:H.228, H2O.2

2 x KOJ: 5-HYDROXY-2-(HYDROXYMETHYL)-4H-PYRAN-4-ONE(Non-covalent)

KOJ.3: 12 residues within 4Å: Chain A: H.39, H.57, H.201, N.202, H.205, R.206, M.212, V.214, V.215, A.218 Ligands: CU.1, CU.2 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:H.205 pi-Stacking: A:H.205 KOJ.6: 14 residues within 4Å: Chain B: H.39, H.57, H.201, N.202, H.205, R.206, M.212, G.213, V.214, V.215, A.218, F.224 Ligands: CU.4, CU.5 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:H.205, B:V.215 Hydrogen bonds: B:R.206 pi-Stacking: B:H.205

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Deri, B. et al., The unravelling of the complex pattern of tyrosinase inhibition. Sci Rep (2016)

Release Date

2016-10-12

Peptides

Tyrosinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Tyrosinase

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