SMTL ID : 5i42.2 (1 other biounit)

Structure of HIV-1 Reverse Transcriptase in complex with a DNA aptamer, AZTTP, and CA(2+) ion

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-1-1-mer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: D.110, V.111, D.185 Ligands: AZT.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.110, A:V.111, A:D.185

1 x AZT: 3'-AZIDO-3'-DEOXYTHYMIDINE-5'-TRIPHOSPHATE(Non-covalent)

AZT.2: 16 residues within 4Å: Chain A: K.65, R.72, D.110, V.111, G.112, D.113, A.114, Y.115, F.116, Q.151, D.185, K.220 Chain C: A.5, C.6, G.38 Ligands: CA.1 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:Y.115, A:Q.151 Hydrogen bonds: A:V.111, A:D.113, A:D.113, A:A.114, A:Y.115, A:F.116, A:Q.151 Salt bridges: A:K.65, A:K.65, A:K.65, A:K.70, A:R.72, A:R.72, A:K.220

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Das, K. et al., Conformational States of HIV-1 Reverse Transcriptase for Nucleotide Incorporation vs Pyrophosphorolysis-Binding of Foscarnet. Acs Chem.Biol. (2016)

Release Date

2016-06-01

Peptides

HIV-1 REVERSE TRANSCRIPTASE P66 SUBUNIT: A
HIV-1 REVERSE TRANSCRIPTASE P51 SUBUNIT: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

HIV-1 REVERSE TRANSCRIPTASE P66 SUBUNIT

HIV-1 REVERSE TRANSCRIPTASE P51 SUBUNIT

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