SMTL ID : 5i4m.1

Crystal structure of Amidase, hydantoinase/carbamoylase family from Burkholderia vietnamiensis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 7 residues within 4Å: Chain A: H.104, D.115, G.116, E.149, H.211 Ligands: ZN.2, 3PG.3 5 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions Metal complexes: A:H.104, A:D.115, A:H.211, 3PG.3, H2O.8 ZN.2: 6 residues within 4Å: Chain A: D.115, E.150, Q.214, H.403 Ligands: ZN.1, 3PG.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:D.115, A:E.150, A:E.150, A:H.403, 3PG.3 ZN.4: 7 residues within 4Å: Chain B: H.104, D.115, G.116, E.149, H.211 Ligands: ZN.5, 3PG.6 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.104, B:D.115, B:H.211, H2O.23 ZN.5: 6 residues within 4Å: Chain B: D.115, E.150, Q.214, H.403 Ligands: ZN.4, 3PG.6 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Ligand interactions Metal complexes: B:D.115, B:E.150, B:E.150, B:H.403, 3PG.6

2 x 3PG: 3-PHOSPHOGLYCERIC ACID(Non-covalent)

3PG.3: 19 residues within 4Å: Chain A: H.104, D.115, E.149, E.150, A.157, M.158, H.211, Q.214, Q.234, W.236, R.309, A.377, G.378, H.379, H.403 Chain B: H.247, N.296 Ligands: ZN.1, ZN.2 14 PLIP interactions: 11 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:Q.214, A:Q.234, A:G.378, A:G.378, B:N.296 Water bridges: A:H.379, A:H.379 Salt bridges: A:H.104, A:H.211, A:R.309, A:H.379, A:H.403, B:H.247, B:H.247 3PG.6: 19 residues within 4Å: Chain A: H.247, N.296 Chain B: H.104, D.115, E.149, E.150, A.157, M.158, H.211, Q.214, Q.234, W.236, R.309, A.377, G.378, H.379, H.403 Ligands: ZN.4, ZN.5 12 PLIP interactions: 9 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:Q.214, B:Q.234, B:G.378, B:G.378, A:N.296 Salt bridges: B:H.104, B:H.211, B:R.309, B:H.379, B:H.403, A:H.247, A:H.247

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abendroth, J. et al., Crystal structure of Amidase, hydantoinase/carbamoylase family from Burkholderia vietnamiensis. to be published

Release Date

2016-03-02

Peptides

Amidase, hydantoinase/carbamoylase family: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Amidase, hydantoinase/carbamoylase family