- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.09 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x CU: COPPER (II) ION(Non-covalent)
- 3 x ACT: ACETATE ION(Non-functional Binders)
ACT.3: 4 residues within 4Å:- Chain A: T.221, G.222, H.312, K.314
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:G.222
- Salt bridges: A:H.312, A:K.314
ACT.15: 4 residues within 4Å:- Chain B: T.221, G.222, H.312, K.314
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:G.222
- Salt bridges: B:H.312, B:K.314
ACT.27: 4 residues within 4Å:- Chain C: T.221, G.222, H.312, K.314
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:G.222
- Salt bridges: C:H.312, C:K.314
- 3 x MLI: MALONATE ION(Non-functional Binders)
MLI.4: 5 residues within 4Å:- Chain A: G.218, T.221, F.305, A.310, H.312
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:A.310
- Water bridges: A:G.218, A:G.308, A:A.310
- Salt bridges: A:H.312, A:H.312
MLI.16: 5 residues within 4Å:- Chain B: G.218, T.221, F.305, A.310, H.312
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:A.310
- Water bridges: B:G.218, B:G.308, B:A.310
- Salt bridges: B:H.312, B:H.312
MLI.28: 5 residues within 4Å:- Chain C: G.218, T.221, F.305, A.310, H.312
6 PLIP interactions:6 interactions with chain C- Hydrophobic interactions: C:A.310
- Water bridges: C:G.218, C:G.308, C:A.310
- Salt bridges: C:H.312, C:H.312
- 21 x NO2: NITRITE ION(Non-covalent)
NO2.5: 9 residues within 4Å:- Chain A: D.91, H.93, H.128
- Chain C: H.248, I.250, H.299, L.301
- Ligands: CU.2, NO.6
No protein-ligand interaction detected (PLIP)NO2.7: 5 residues within 4Å:- Chain A: R.243, D.244
- Chain C: R.246, N.300
- Ligands: NO2.35
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.244, A:D.244
NO2.8: 2 residues within 4Å:- Chain A: T.164, R.233
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.233, A:R.233
NO2.9: 7 residues within 4Å:- Chain A: Q.271
- Chain B: W.258, A.259, T.260, G.261, K.262, N.265
6 PLIP interactions:4 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:T.260, B:K.262, B:N.265, A:Q.271, A:Q.271
- Water bridges: B:T.260
NO2.10: 4 residues within 4Å:- Chain A: K.118, T.120
- Chain C: R.289, L.323
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain C- Hydrogen bonds: A:K.118, C:R.289, C:R.289
NO2.11: 5 residues within 4Å:- Chain A: R.243, R.246, N.300, E.303
- Ligands: NO2.19
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.243, A:N.300
- Water bridges: A:R.246
NO2.12: 4 residues within 4Å:- Chain A: G.218, A.219, T.221, H.224
No protein-ligand interaction detected (PLIP)NO2.17: 9 residues within 4Å:- Chain A: H.248, I.250, H.299, L.301
- Chain B: D.91, H.93, H.128
- Ligands: CU.14, NO.18
No protein-ligand interaction detected (PLIP)NO2.19: 5 residues within 4Å:- Chain A: R.246, N.300
- Chain B: R.243, D.244
- Ligands: NO2.11
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:D.244, B:D.244
NO2.20: 2 residues within 4Å:- Chain B: T.164, R.233
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.233, B:R.233
- Water bridges: B:T.164
NO2.21: 7 residues within 4Å:- Chain B: Q.271
- Chain C: W.258, A.259, T.260, G.261, K.262, N.265
6 PLIP interactions:4 interactions with chain C, 2 interactions with chain B- Hydrogen bonds: C:T.260, C:K.262, C:N.265, B:Q.271, B:Q.271
- Water bridges: C:T.260
NO2.22: 4 residues within 4Å:- Chain A: R.289, L.323
- Chain B: K.118, T.120
4 PLIP interactions:1 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:K.118, A:R.289, A:R.289
- Water bridges: A:D.322
NO2.23: 5 residues within 4Å:- Chain B: R.243, R.246, N.300, E.303
- Ligands: NO2.31
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.243, B:N.300
- Water bridges: B:R.246
NO2.24: 4 residues within 4Å:- Chain B: G.218, A.219, T.221, H.224
No protein-ligand interaction detected (PLIP)NO2.29: 9 residues within 4Å:- Chain B: H.248, I.250, H.299, L.301
- Chain C: D.91, H.93, H.128
- Ligands: CU.26, NO.30
No protein-ligand interaction detected (PLIP)NO2.31: 5 residues within 4Å:- Chain B: R.246, N.300
- Chain C: R.243, D.244
- Ligands: NO2.23
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:D.244, C:D.244
NO2.32: 2 residues within 4Å:- Chain C: T.164, R.233
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:R.233, C:R.233
- Water bridges: C:T.164
NO2.33: 7 residues within 4Å:- Chain A: W.258, A.259, T.260, G.261, K.262, N.265
- Chain C: Q.271
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain C- Hydrogen bonds: A:K.262, A:N.265, C:Q.271, C:Q.271
- Water bridges: A:T.260
NO2.34: 4 residues within 4Å:- Chain B: R.289, L.323
- Chain C: K.118, T.120
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: B:R.289, B:R.289, C:K.118
- Water bridges: B:D.322
NO2.35: 5 residues within 4Å:- Chain C: R.243, R.246, N.300, E.303
- Ligands: NO2.7
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:R.243, C:N.300
- Water bridges: C:R.246
NO2.36: 4 residues within 4Å:- Chain C: G.218, A.219, T.221, H.224
No protein-ligand interaction detected (PLIP)- 3 x NO: NITRIC OXIDE(Non-covalent)
NO.6: 8 residues within 4Å:- Chain A: D.91, H.93, H.128
- Chain C: H.248, I.250, H.299
- Ligands: CU.2, NO2.5
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.91
NO.18: 8 residues within 4Å:- Chain A: H.248, I.250, H.299
- Chain B: D.91, H.93, H.128
- Ligands: CU.14, NO2.17
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:H.248
NO.30: 8 residues within 4Å:- Chain B: H.248, I.250, H.299
- Chain C: D.91, H.93, H.128
- Ligands: CU.26, NO2.29
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: B:H.248, C:H.128
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Horrell, S. et al., Serial crystallography captures enzyme catalysis in copper nitrite reductase at atomic resolution from one crystal. Iucrj (2016)
- Release Date
- 2016-07-13
- Peptides
- Copper-containing nitrite reductase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.09 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x CU: COPPER (II) ION(Non-covalent)
- 3 x ACT: ACETATE ION(Non-functional Binders)
- 3 x MLI: MALONATE ION(Non-functional Binders)
- 21 x NO2: NITRITE ION(Non-covalent)
- 3 x NO: NITRIC OXIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Horrell, S. et al., Serial crystallography captures enzyme catalysis in copper nitrite reductase at atomic resolution from one crystal. Iucrj (2016)
- Release Date
- 2016-07-13
- Peptides
- Copper-containing nitrite reductase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A