SMTL ID : 5i8e.2 (1 other biounit)

Crystal Structure of Broadly Neutralizing HIV-1 Fusion Peptide-Targeting Antibody VRC34.01 Fab

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

hetero-1-1-mer

Ligands

5 x ZN: ZINC ION(Non-covalent)

ZN.1: 2 residues within 4Å: Chain A: W.50, T.59 No protein-ligand interaction detected (PLIP) ZN.2: 1 residues within 4Å: Chain A: H.54 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.54, H2O.1 ZN.3: 2 residues within 4Å: Chain A: E.105 Chain B: E.31 4 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: A:E.105, A:E.105, B:E.31, H2O.1 ZN.4: 5 residues within 4Å: Chain A: G.171, H.173, T.192 Chain B: N.136, N.137 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.173, H2O.2 ZN.5: 1 residues within 4Å: Chain B: I.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kong, R. et al., Fusion peptide of HIV-1 as a site of vulnerability to neutralizing antibody. Science (2016)

Release Date

2016-05-25

Peptides

VRC34.01 Fab heavy chain: A
VRC34.01 Fab light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

VRC34.01 Fab heavy chain

VRC34.01 Fab light chain

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