SMTL ID : 5i8t.1

Structure of Mouse Acireductone dioxygenase with Ni2+ ion and D-lactic acid in the active site

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 5 residues within 4Å: Chain A: H.88, H.90, E.94, H.133 Ligands: LAC.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.88, A:H.90, A:E.94, A:H.133, LAC.2

1 x LAC: LACTIC ACID(Non-covalent)

LAC.2: 11 residues within 4Å: Chain A: F.84, H.88, H.90, E.94, R.96, F.105, H.133, R.134, F.135 Ligands: NI.1, IPA.3 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.84, A:F.135 Hydrogen bonds: A:E.94 Water bridges: A:R.96, A:R.96, A:R.96, A:R.96 Salt bridges: A:H.88, A:H.90, A:R.96

1 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.3: 9 residues within 4Å: Chain A: I.67, I.69, F.84, R.96, F.105, F.135, V.143, A.145 Ligands: LAC.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.69, A:F.84, A:F.105, A:F.135 Hydrogen bonds: A:R.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Deshpande, A.R. et al., Metal-Dependent Function of a Mammalian Acireductone Dioxygenase. Biochemistry (2016)

Release Date

2016-03-09

Peptides

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase

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