SMTL ID : 5iat.1

Mechanistic and Structural Analysis of Substrate Recognition and Cofactor Binding by an Unusual Bacterial Prolyl Hydroxylase - apo-BaP4H

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: Y.131, N.142, R.143, I.144, Y.181, F.182, N.189 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.143, A:N.189 Water bridges: A:Y.131, A:N.142, A:Q.186 GOL.2: 8 residues within 4Å: Chain B: Y.131, N.142, R.143, I.144, Y.181, F.182, Q.186, N.189 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.186, B:N.189

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 5 residues within 4Å: Chain A: E.38 Chain B: E.159, F.161, N.166, S.168 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.166 PEG.4: 6 residues within 4Å: Chain B: K.98, S.101, S.102, N.105, V.106, P.107 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.102

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schnicker, N.J. et al., Bacillus anthracis Prolyl 4-Hydroxylase Modifies Collagen-like Substrates in Asymmetric Patterns. J.Biol.Chem. (2016)

Release Date

2016-04-27

Peptides

Procollagen-Proline Dioxygenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Procollagen-Proline Dioxygenase

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