SMTL ID : 5iau.2 (4 other biounits)

A C69-family cysteine dipeptidase from Lactobacillus farciminis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

monomer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: D.37, N.76, N.81, W.84 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.37, A:N.76, A:N.81 Water bridges: A:H.320 EDO.2: 3 residues within 4Å: Chain A: G.451, D.452, T.455 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.455 Water bridges: A:D.452 EDO.3: 2 residues within 4Å: Chain A: D.184, H.274 No protein-ligand interaction detected (PLIP) EDO.4: 4 residues within 4Å: Chain A: Y.300, D.391, Y.392, D.393 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:D.391, A:D.393 Water bridges: A:V.299, A:Y.300, A:D.391, A:Y.392, A:Y.392, A:F.394 EDO.5: 7 residues within 4Å: Chain A: N.105, R.107, R.230, H.231, G.234, S.235, A.236 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.105, A:R.107, A:S.235 Water bridges: A:R.107, A:R.192, A:A.236

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kono, R. et al., A C69-family cysteine dipeptidase from Lactobacillus farciminis; substrate recognition mechanism and autoproteolytic mechanism in enzyme maturation. To Be Published

Release Date

2017-03-01

Peptides

Dipeptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Dipeptidase

Related Entries With Identical Sequence