SMTL ID : 5ibl.2 (1 other biounit)

Human antibody 6639 in complex with influenza hemagglutinin H1 X-181

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.39 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain D: N.288 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.288 NAG.2: 4 residues within 4Å: Chain D: R.46, G.47, D.275, N.277 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:D.275 NAG.3: 5 residues within 4Å: Chain D: E.67, D.87, N.88, P.138, R.222 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:K.55, D:P.138, D:R.222, D:R.222 NAG.4: 10 residues within 4Å: Chain C: I.10, G.13, W.14, M.17, G.20, W.21 Chain D: N.11, H.29, R.320, N.321 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:W.21 NAG.5: 1 residues within 4Å: Chain D: N.24 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Raymond, D.D. et al., Influenza immunization elicits antibodies specific for an egg-adapted vaccine strain. Nat. Med. (2016)

Release Date

2016-11-09

Peptides

6639 Heavy Chain: A
6639 Light Chain: B
Hemagglutinin: C
Hemagglutinin: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
E

D
F

6639 Heavy Chain

6639 Light Chain

Hemagglutinin

Hemagglutinin

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