SMTL ID : 5ig2.2 (2 other biounits)

Crystal structure of a short chain dehydrogenase/reductase SDR from Burkholderia phymatum in complex with NAD

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 30 residues within 4Å: Chain A: G.21, S.24, G.25, F.26, D.45, V.46, D.47, T.70, D.71, V.72, N.98, A.99, G.100, V.101, V.121, T.149, A.150, S.151, Y.164, K.168, P.196, A.197, F.198, V.199, T.201, G.202, I.203, R.208, V.209 Ligands: ACT.2 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:F.26 Hydrogen bonds: A:S.24, A:F.26, A:V.46, A:D.71, A:V.72, A:N.98, A:G.100, A:Y.164, A:K.168, A:V.199, A:V.199, A:T.201, A:T.201, A:G.202, A:R.208 Water bridges: A:G.27, A:D.47, A:S.73, A:N.98, A:R.208 Salt bridges: A:R.208 NAD.3: 30 residues within 4Å: Chain B: G.21, S.24, G.25, F.26, D.45, V.46, D.47, T.70, D.71, V.72, N.98, A.99, G.100, V.101, V.121, T.149, A.150, S.151, Y.164, K.168, P.196, A.197, F.198, V.199, T.201, G.202, I.203, R.208, V.209 Ligands: ACT.4 22 PLIP interactions: 22 interactions with chain B Hydrophobic interactions: B:F.26 Hydrogen bonds: B:S.24, B:F.26, B:V.46, B:D.71, B:D.71, B:V.72, B:N.98, B:G.100, B:K.168, B:V.199, B:V.199, B:T.201, B:T.201, B:G.202, B:R.208 Water bridges: B:G.27, B:D.47, B:S.73, B:N.98, B:R.208 Salt bridges: B:R.208

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 5 residues within 4Å: Chain A: S.151, Y.164, F.198, L.231 Ligands: NAD.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.164, A:L.231 Hydrogen bonds: A:S.151 ACT.4: 5 residues within 4Å: Chain B: S.151, Y.164, F.198, L.231 Ligands: NAD.3 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:Y.164, B:L.231 Hydrogen bonds: B:S.151, B:Y.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mayclin, S.J. et al., Crystal structure of a short chain dehydrogenase/reductase SDR from Burkholderia phymatum in complex with NAD. to be published

Release Date

2016-06-15

Peptides

Short-chain dehydrogenase/reductase SDR: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Short-chain dehydrogenase/reductase SDR

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