SMTL ID : 5ign.1

Crystal structure of human BRD9 bromodomain in complex with LP99 chemical probe

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x 6B2: N-[(2R,3S)-2-(4-chlorophenyl)-1-(1,4-dimethyl-2-oxo-1,2-dihydroquinolin-7-yl)-6-oxopiperidin-3-yl]-2-methylpropane-1-sulfonamide(Non-covalent)

6B2.1: 12 residues within 4Å: Chain A: H.31, G.32, F.33, F.34, F.36, P.37, V.38, T.39, I.42, A.43, N.89, Y.95 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.33, A:F.36, A:I.42, A:A.43, A:Y.95 Hydrogen bonds: A:G.32, A:N.89, A:Y.95 pi-Stacking: A:Y.95, A:Y.95 6B2.2: 13 residues within 4Å: Chain B: H.31, G.32, F.33, F.34, A.35, F.36, P.37, V.38, T.39, I.42, A.43, N.89, Y.95 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:F.33, B:A.35, B:I.42, B:A.43 Hydrogen bonds: B:G.32, B:N.89 pi-Stacking: B:Y.95, B:Y.95 Halogen bonds: B:T.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tallant, C. et al., Crystal structure of BRD9 bromodomain in complex with LP99 chemical probe. To Be Published

Release Date

2016-03-30

Peptides

Bromodomain-containing protein 9: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Bromodomain-containing protein 9

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