SMTL ID : 5igp.2 (1 other biounit)

Macrolide 2'-phosphotransferase type I - complex with GDP and erythromycin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 17 residues within 4Å: Chain A: Y.36, I.38, I.40, V.50, R.52, Y.94, M.96, L.97, E.98, D.99, S.100, T.101, G.204, H.205, L.207, I.218, D.219 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:L.97, A:L.97, A:D.99, A:G.204, A:H.205 Water bridges: A:R.52, A:R.52, A:T.101, A:T.101, A:D.219 Salt bridges: A:R.52, A:R.52 GDP.4: 17 residues within 4Å: Chain B: Y.36, I.38, I.40, V.50, R.52, Y.94, M.96, L.97, E.98, D.99, S.100, T.101, G.204, H.205, L.207, I.218, D.219 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:L.97, B:L.97, B:D.99, B:G.204, B:H.205 Water bridges: B:R.52, B:R.52, B:T.101, B:T.101, B:D.219 Salt bridges: B:R.52, B:R.52

2 x ERY: ERYTHROMYCIN A(Non-covalent)

ERY.2: 23 residues within 4Å: Chain A: M.103, I.105, S.109, S.110, P.112, V.115, D.200, L.201, Y.202, V.203, H.205, E.222, A.233, A.234, M.237, V.238, L.270, G.273, T.276, Y.277, F.280, Y.289 Chain B: V.3 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.202, A:Y.202, A:V.238, A:Y.277, A:F.280, A:F.280 Hydrogen bonds: A:D.200 Water bridges: A:S.110 Salt bridges: A:D.200 ERY.5: 23 residues within 4Å: Chain A: V.3 Chain B: M.103, I.105, S.109, S.110, P.112, V.115, D.200, L.201, Y.202, V.203, H.205, E.222, A.233, A.234, M.237, V.238, L.270, G.273, T.276, Y.277, F.280, Y.289 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:Y.202, B:Y.202, B:V.238, B:Y.277, B:F.280, B:F.280 Hydrogen bonds: B:D.200, B:D.200 Water bridges: B:S.110 Salt bridges: B:D.200

2 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.3: 7 residues within 4Å: Chain A: I.139, I.149, R.150, T.151, P.152, S.194, V.225 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.149, A:V.225 Water bridges: A:S.194, A:S.194 IPA.6: 7 residues within 4Å: Chain B: I.139, I.149, R.150, T.151, P.152, S.194, V.225 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:I.149, B:V.225 Water bridges: B:S.194, B:S.194

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fong, D.H. et al., Structural Basis for Kinase-Mediated Macrolide Antibiotic Resistance. Structure (2017)

Release Date

2017-04-26

Peptides

Macrolide 2'-phosphotransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Macrolide 2'-phosphotransferase

Related Entries With Identical Sequence