SMTL ID : 5igs.1 (1 other biounit)

Macrolide 2'-phosphotransferase type I - complex with guanosine and oleandomycin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.38 Å

Oligo State

monomer

Ligands

1 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.1: 8 residues within 4Å: Chain A: I.139, I.149, R.150, T.151, P.152, F.193, S.194, V.225 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:I.149

1 x ZIO: (3S,5R,6S,7R,8R,11R,12S,13R,14S,15S)-6-HYDROXY-5,7,8,11,13,15-HEXAMETHYL-4,10-DIOXO-14-{[3,4,6-TRIDEOXY-3-(DIMETHYLAMINO)-BETA-D-XYLO-HEXOPYRANOSYL]OXY}-1,9-DIOXASPIRO[2.13]HEXADEC-12-YL 2,6-DIDEOXY-3-O-METHYL-ALPHA-L-ARABINO-HEXOPYRANOSIDE(Non-covalent)

ZIO.2: 20 residues within 4Å: Chain A: M.103, I.105, S.109, S.110, P.112, D.200, Y.202, H.205, S.221, E.222, I.230, A.233, A.234, M.237, V.238, L.270, G.273, T.276, Y.277, F.280 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.105, A:Y.202, A:Y.202, A:A.234, A:Y.277, A:F.280, A:F.280 Water bridges: A:T.276, A:T.276 Salt bridges: A:D.200

1 x GMP: GUANOSINE(Non-covalent)

GMP.3: 16 residues within 4Å: Chain A: I.38, I.40, V.50, R.52, Y.94, M.96, L.97, E.98, D.99, S.100, T.101, G.204, H.205, L.207, I.218, D.219 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:R.52, A:L.97, A:L.97, A:D.99, A:T.101, A:H.205, A:D.219 Water bridges: A:R.52, A:Y.94, A:D.219, A:D.219, A:D.219

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fong, D.H. et al., Structural Basis for Kinase-Mediated Macrolide Antibiotic Resistance. Structure (2017)

Release Date

2017-04-26

Peptides

Macrolide 2'-phosphotransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Macrolide 2'-phosphotransferase

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