SMTL ID : 5igv.1

Macrolide 2'-phosphotransferase type II - complex with GDP and azithromycin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: H.205, D.219 Ligands: GDP.3 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.205, A:D.219, H2O.3, H2O.11

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain A: D.219, T.221 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.221, H2O.4, H2O.9, H2O.11, H2O.11

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.3: 19 residues within 4Å: Chain A: N.27, F.33, A.35, F.37, V.47, R.49, Y.92, K.94, L.95, G.97, V.98, P.99, T.102, G.204, H.205, M.207, I.218, D.219 Ligands: MG.1 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:N.27, A:Y.92, A:K.94, A:L.95, A:H.205, A:D.219 Water bridges: A:R.49, A:R.49, A:L.95, A:G.97, A:G.97, A:G.204, A:D.219 Salt bridges: A:R.49

1 x ZIT: AZITHROMYCIN(Non-covalent)

ZIT.4: 22 residues within 4Å: Chain A: I.103, I.107, G.108, N.109, Y.110, G.199, D.200, V.201, H.202, H.205, E.222, H.230, I.233, F.234, R.237, A.238, Y.273, S.276, I.277, F.280, Y.289, M.292 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:I.103, A:Y.110, A:I.233, A:F.234, A:R.237, A:I.277, A:F.280, A:F.280 Hydrogen bonds: A:N.109, A:D.200, A:H.202, A:S.276 Water bridges: A:E.222, A:R.237, A:R.237 Salt bridges: A:D.200, A:E.222, A:R.237, A:R.237

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fong, D.H. et al., Structural Basis for Kinase-Mediated Macrolide Antibiotic Resistance. Structure (2017)

Release Date

2017-04-26

Peptides

Macrolide 2'-phosphotransferase II: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Macrolide 2'-phosphotransferase II

Related Entries With Identical Sequence