SMTL ID : 5igy.1

Macrolide 2'-phosphotransferase type II - complex with GDP and erythromycin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: H.205, D.219 Ligands: GDP.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.205, A:D.219, H2O.10, H2O.10

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.2: 23 residues within 4Å: Chain A: N.27, S.29, G.30, L.31, D.32, F.33, A.35, F.37, V.47, R.49, Y.92, K.94, L.95, G.97, V.98, P.99, G.204, H.205, M.207, I.218, D.219, T.221 Ligands: CA.1 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:N.27, A:S.29, A:L.31, A:D.32, A:F.33, A:L.95, A:H.205, A:D.219 Water bridges: A:S.29, A:K.94, A:K.94, A:G.97, A:G.97, A:G.204 Salt bridges: A:R.49, A:R.49

1 x ERY: ERYTHROMYCIN A(Non-covalent)

ERY.3: 22 residues within 4Å: Chain A: L.31, I.103, H.105, G.108, N.109, Y.110, G.199, D.200, V.201, H.202, E.222, H.230, I.233, F.234, R.237, A.238, Y.273, S.276, I.277, F.280, Y.289, M.292 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:H.202, A:I.233, A:F.234, A:R.237, A:Y.273, A:I.277, A:F.280, A:F.280, A:Y.289 Hydrogen bonds: A:H.202, A:Y.273, A:Y.273, A:Y.273 Water bridges: A:D.200, A:D.200, A:R.237, A:S.276, A:Y.289, A:Y.289, A:Y.289 Salt bridges: A:D.200, A:R.237

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fong, D.H. et al., Structural Basis for Kinase-Mediated Macrolide Antibiotic Resistance. Structure (2017)

Release Date

2017-04-26

Peptides

Macrolide 2'-phosphotransferase II: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Macrolide 2'-phosphotransferase II

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