SMTL ID : 5ikz.1

Glycerol bound structure of Obc1, a bifunctional enzyme for quorum sensing-dependent oxalogenesis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: H.225, H.227, E.350, R.473, E.477 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.225, A:H.227, A:E.477, H2O.2, H2O.5

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: S.785, H.934, H.1069, S.1070, I.1071 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.785, A:S.785, A:H.1069, A:I.1071 Water bridges: A:R.1072

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oh, J. et al., Structural Insights into an Oxalate-producing Serine Hydrolase with an Unusual Oxyanion Hole and Additional Lyase Activity. J.Biol.Chem. (2016)

Release Date

2016-06-01

Peptides

Oxalate biosynthetic component 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Oxalate biosynthetic component 1

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