SMTL ID : 5in9.1 (1 other biounit)

Crystal structure of Grp94 bound to methyl 3-chloro-2-(2-(1-((5-chlorofuran-2-yl)methyl)-1H-imidazol-2-yl)ethyl)-4,6-dihydroxybenzoate, an inhibitor based on the BnIm and Radamide scaffolds.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.1: 4 residues within 4Å: Chain A: N.16, M.19, K.20, S.160 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.20

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: K.8, E.157, S.158, D.159, E.162, F.163, S.164 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.8, A:E.157, A:D.159, A:D.159, A:E.162 GOL.3: 4 residues within 4Å: Chain A: D.43, D.46, K.47, L.50 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.46, A:D.46 GOL.4: 4 residues within 4Å: Chain A: E.64, L.65, T.66, P.211 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.65, A:L.65 GOL.5: 3 residues within 4Å: Chain A: K.70, W.215, W.229 No protein-ligand interaction detected (PLIP) GOL.6: 5 residues within 4Å: Chain A: I.143, T.145, R.170, T.181 Ligands: GOL.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.145, A:R.170, A:R.170 GOL.7: 5 residues within 4Å: Chain A: K.70, H.79, T.81, T.179 Ligands: GOL.6 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.70, A:T.81, A:T.179 Water bridges: A:T.81 GOL.8: 3 residues within 4Å: Chain A: A.10, N.161, E.162 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.161 GOL.9: 5 residues within 4Å: Chain A: I.208, N.209, F.210, P.211, N.233 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.209, A:N.233

1 x 6C0: methyl 3-chloro-2-(2-{1-[(5-chlorofuran-2-yl)methyl]-1H-imidazol-2-yl}ethyl)-4,6-dihydroxybenzoate(Non-covalent)

6C0.10: 15 residues within 4Å: Chain A: L.37, N.40, A.44, D.82, V.85, G.86, M.87, N.95, I.99, K.101, G.129, V.130, F.132, T.178, I.180 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:K.101, A:V.130 Hydrogen bonds: A:L.37, A:G.86 Water bridges: A:G.84, A:T.178 Salt bridges: A:K.47 pi-Cation interactions: A:K.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Crowley, V.M. et al., Development of Glucose Regulated Protein 94-Selective Inhibitors Based on the BnIm and Radamide Scaffold. J.Med.Chem. (2016)

Release Date

2016-05-04

Peptides

Endoplasmin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endoplasmin

Related Entries With Identical Sequence