SMTL ID : 5ind.1 (1 other biounit)

Crystal structure of HLA-B5801, a protective HLA allele for HIV-1 infection

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.13 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLN- ALA- SER- GLN- ASP- VAL- LYS- ASN- TRP: GLN-ALA-SER-GLN-ASP-VAL-LYS-ASN-TRP(Non-covalent)

GLN-ALA-SER-GLN-ASP-VAL-LYS-ASN-TRP.1: 29 residues within 4Å: Chain A: Y.7, Y.9, E.63, N.66, M.67, S.70, T.73, Y.74, E.76, N.77, I.80, Y.84, I.95, R.97, Y.99, S.116, A.117, Y.123, T.143, K.146, W.147, A.150, V.152, Q.155, L.156, Y.159, L.163, W.167, Y.171 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:Y.7, A:I.80, A:I.95, A:I.95, A:A.150, A:V.152, A:W.167 Hydrogen bonds: A:Y.9, A:E.63, A:N.66, A:E.76, A:N.77, A:N.77, A:Y.99, A:T.143, A:Y.171, A:Y.171 Water bridges: A:Y.7, A:S.70, A:S.70, A:S.70, A:N.77, A:R.97, A:R.97, A:S.116, A:K.146 Salt bridges: A:R.97, A:K.146 pi-Stacking: A:Y.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, X. et al., Crystal structure of HLA-B*5801, a protective HLA allele for HIV-1 infection. Protein Cell (2016)

Release Date

2016-10-05

Peptides

HLA class I histocompatibility antigen, B-58 alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HLA class I histocompatibility antigen, B-58 alpha chain

Beta-2-microglobulin

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