SMTL ID : 5ip2.1

Tomato spotted wilt tospovirus nucleocapsid protein-ssRNA complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

homo-trimer

Ligands

2 x U- U- U: RNA (5'-D(P*UP*UP*U)-3')(Non-covalent)

U-U-U.1: 9 residues within 4Å: Chain A: M.85, K.89, S.104, T.113, R.115, I.200, K.204, Y.205, K.213 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:K.204, A:K.204, B:S.104, B:K.213 pi-Cation interactions: A:K.204 U-U-U.2: 7 residues within 4Å: Chain B: K.86 Chain C: S.104, I.107, R.115, K.204, E.209, K.213 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.81, B:S.104, B:R.115, B:R.115 Salt bridges: B:K.89 pi-Cation interactions: A:K.204

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Komoda, K. et al., Asymmetric Trimeric Ring Structure of the Nucleocapsid Protein of Tospovirus. J. Virol. (2017)

Release Date

2017-03-22

Peptides

Nucleoprotein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
A

Nucleoprotein

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