SMTL ID : 5ip3.1

Tomato spotted wilt tospovirus nucleocapsid protein-ssDNA complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-trimer

Ligands

1 x DT- DT- DT- DT- DT: DNA (5'-D(P*TP*TP*TP*TP*T)-3')(Non-covalent)

DT-DT-DT-DT-DT.1: 17 residues within 4Å: Chain A: V.51, F.53, R.81, Q.82, M.85, K.86, K.89, I.107, T.113, F.114, R.115, R.116, P.172, L.173, K.204, Y.205, K.213 Protein-ligand interaction information (PLIP) not available

1 x DT- DT- DT- DT- DT- DT- DT: DNA (5'-D(P*TP*TP*TP*TP*TP*TP*T)-3')(Non-covalent)

DT-DT-DT-DT-DT-DT-DT.2: 25 residues within 4Å: Chain A: K.86, Q.90, S.250, V.251 Chain B: R.81, M.85, K.89, K.102, I.107, T.113, F.114, R.115, R.116, L.147, Y.151, P.172, L.173, Q.191, I.200, K.204, Y.205, E.209, G.212, K.213, T.216 Protein-ligand interaction information (PLIP) not available

1 x DT- DT- DT- DT- DT- DT: DNA (5'-D(P*TP*TP*TP*TP*TP*T)-3')(Non-covalent)

DT-DT-DT-DT-DT-DT.3: 22 residues within 4Å: Chain B: K.86 Chain C: F.53, R.81, M.85, K.89, I.107, T.113, F.114, R.115, R.116, L.147, Y.151, G.168, S.170, P.172, L.173, Q.191, L.198, I.200, K.204, Y.205, K.213 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Komoda, K. et al., Asymmetric Trimeric Ring Structure of the Nucleocapsid Protein of Tospovirus. J. Virol. (2017)

Release Date

2017-03-22

Peptides

Nucleoprotein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
A

Nucleoprotein

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