SMTL ID : 5is0.1

Structure of TRPV1 in complex with capsazepine, determined in lipid nanodisc

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY 3.43 Å

Oligo State

homo-tetramer

Ligands

4 x 6ET: capsazepine(Covalent)

6ET.1: 19 residues within 4Å: Chain A: Y.406, S.407, L.410, F.438, A.441, M.442, T.445, N.446, L.448, Y.449, R.452, A.461, I.464, E.465, I.468 Chain B: F.482, F.486, L.534, L.541 8 PLIP interactions: 1 interactions with chain B, 7 interactions with chain A Hydrophobic interactions: B:F.486, A:L.410, A:L.448, A:E.465 Hydrogen bonds: A:S.407, A:S.407, A:S.407, A:R.452 6ET.2: 19 residues within 4Å: Chain B: Y.406, S.407, L.410, F.438, A.441, M.442, T.445, N.446, L.448, Y.449, R.452, A.461, I.464, E.465, I.468 Chain D: F.482, F.486, L.534, L.541 8 PLIP interactions: 7 interactions with chain B, 1 interactions with chain D Hydrophobic interactions: B:L.410, B:L.448, B:E.465, D:F.486 Hydrogen bonds: B:S.407, B:S.407, B:S.407, B:R.452 6ET.3: 19 residues within 4Å: Chain A: F.482, F.486, L.534, L.541 Chain C: Y.406, S.407, L.410, F.438, A.441, M.442, T.445, N.446, L.448, Y.449, R.452, A.461, I.464, E.465, I.468 8 PLIP interactions: 7 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: C:L.410, C:L.448, C:E.465, A:F.486 Hydrogen bonds: C:S.407, C:S.407, C:S.407, C:R.452 6ET.4: 19 residues within 4Å: Chain C: F.482, F.486, L.534, L.541 Chain D: Y.406, S.407, L.410, F.438, A.441, M.442, T.445, N.446, L.448, Y.449, R.452, A.461, I.464, E.465, I.468 8 PLIP interactions: 7 interactions with chain D, 1 interactions with chain C Hydrophobic interactions: D:L.410, D:L.448, D:E.465, C:F.486 Hydrogen bonds: D:S.407, D:S.407, D:S.407, D:R.452

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gao, Y. et al., TRPV1 structures in nanodiscs reveal mechanisms of ligand and lipid action. Nature (2016)

Release Date

2016-05-25

Peptides

Transient receptor potential cation channel subfamily V member 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
B

C
D

D
E

Membrane

We predict this structure to be a membrane protein.
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Transient receptor potential cation channel subfamily V member 1

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