SMTL ID : 5itp.2 (1 other biounit)

Structure of the periplasmic binding protein NocT from A.tumefaciens in complex with octopine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x 6DB: octopine(Non-covalent)

6DB.1: 18 residues within 4Å: Chain A: E.12, Y.15, Y.18, N.19, W.53, A.70, A.71, M.72, G.73, R.78, M.93, Q.141, T.144, S.145, H.146, S.183, F.186, V.215 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:W.53, A:T.144, A:V.215 Hydrogen bonds: A:Y.15, A:A.70, A:G.73, A:Q.141, A:Q.141, A:S.145, A:S.183 Water bridges: A:S.145 Salt bridges: A:E.12, A:R.78, A:H.146 pi-Cation interactions: A:W.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lang, J. et al., Fitness costs restrict niche expansion by generalist niche-constructing pathogens. ISME J (2017)

Release Date

2016-11-30

Peptides

Nopaline-binding periplasmic protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Nopaline-binding periplasmic protein

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