SMTL ID : 5iva.1

The LPS Transporter LptDE from Pseudomonas aeruginosa, core complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.99 Å

Oligo State

hetero-1-1-mer

Ligands

7 x C8E: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE(Non-functional Binders)

C8E.1: 3 residues within 4Å: Chain A: W.559, Y.561 Ligands: C8E.5 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.561 C8E.2: 10 residues within 4Å: Chain A: V.555, A.571, G.573, G.574, F.575, N.588, Y.590, R.608, G.609 Ligands: C8E.5 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:R.608 C8E.3: 5 residues within 4Å: Chain A: Y.130, Y.148, R.150, Q.174, A.193 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.193 Hydrogen bonds: A:Y.130, A:R.150 C8E.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) C8E.5: 5 residues within 4Å: Chain A: W.559, A.571, Y.590 Ligands: C8E.1, C8E.2 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:A.571 Hydrogen bonds: A:R.608 C8E.6: 4 residues within 4Å: Chain A: Y.358, Y.360, N.400, F.429 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.429 C8E.7: 3 residues within 4Å: Chain A: L.273, P.275, Y.294 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Botos, I. et al., Structural and Functional Characterization of the LPS Transporter LptDE from Gram-Negative Pathogens. Structure (2016)

Release Date

2016-05-18

Peptides

LPS-assembly protein LptD: A
LPS-assembly lipoprotein LptE: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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LPS-assembly protein LptD

LPS-assembly lipoprotein LptE