SMTL ID : 5ivq.1

Crystal Structure of HIV Protease complexed with methyl N-[(1S)-1-benzhydryl-2-(3-morpholin-4-ium-2-ylpropylamino)-2-oxo-ethyl]carbamate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.57 Å

Oligo State

homo-dimer

Ligands

1 x 6EH: Nalpha-(methoxycarbonyl)-N-{3-[(2R)-morpholin-2-yl]propyl}-beta-phenyl-L-phenylalaninamide(Non-covalent)

6EH.1: 15 residues within 4Å: Chain A: D.25, G.27, A.28, D.29, G.48, G.49, I.50, I.84 Chain B: R.8, L.23, D.25, G.27, P.81, V.82, I.84 13 PLIP interactions: 9 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:L.23, B:P.81, B:P.81, B:V.82, B:V.82, B:V.82, B:I.84 Hydrogen bonds: B:R.8, B:D.25, A:D.29, A:D.29, A:G.48 Water bridges: A:D.30

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: G.73, T.74, N.88 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain B: G.73, T.74, N.88 Ligand excluded by PLIP CL.4: 1 residues within 4Å: Chain B: W.6 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bungard, C.J. et al., Discovery of MK-8718, an HIV Protease Inhibitor Containing a Novel Morpholine Aspartate Binding Group. Acs Med.Chem.Lett. (2016)

Release Date

2016-05-18

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protease

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