SMTL ID : 5j0d.1

Crystal structure of the bromodomain of human CREBBP in complex with a benzoxazepine compound

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.05 Å

Oligo State

monomer

Ligands

1 x 6F9: 7-(3,5-dimethoxyphenyl)-N-[(3S)-1-methylpiperidin-3-yl]-4-propanoyl-2,3,4,5-tetrahydro-1,4-benzoxazepine-9-carboxamide(Non-covalent)

6F9.1: 12 residues within 4Å: Chain A: L.31, P.32, F.33, V.37, L.42, I.44, Y.47, N.90, R.95, V.96, F.99 Ligands: EDO.4 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.31, A:P.32, A:P.32, A:F.33, A:V.37, A:L.42, A:V.96, A:V.96 Hydrogen bonds: A:N.90 Water bridges: A:R.95

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: K.63, Q.68, Y.69, Q.74, D.78 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.63 Water bridges: A:Q.74, A:D.78 EDO.3: 3 residues within 4Å: Chain A: E.29, F.99, K.102 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.29 EDO.4: 4 residues within 4Å: Chain A: D.27, P.28, L.31 Ligands: 6F9.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Popp, T.A. et al., Development of Selective CBP/P300 Benzoxazepine Bromodomain Inhibitors. J.Med.Chem. (2016)

Release Date

2016-10-05

Peptides

CREB-binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CREB-binding protein

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