SMTL ID : 5j1n.1

Lassa virus L protein cap-snatching endonuclease. Bound to one manganese ion

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.09 Å

Oligo State

monomer

Ligands

1 x MN3: MANGANESE (III) ION(Non-covalent)

MN3.1: 3 residues within 4Å: Chain A: D.90, E.103, K.123 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.90, A:E.103, H2O.1, H2O.3, H2O.6

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 2 residues within 4Å: Chain A: S.24, L.28 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.24 MPD.3: 3 residues within 4Å: Chain A: R.25, A.29, V.32 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:R.25, A:A.29, A:V.32 Hydrogen bonds: A:A.29

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Reguera, J. et al., Comparative Structural and Functional Analysis of Bunyavirus and Arenavirus Cap-Snatching Endonucleases. Plos Pathog. (2016)

Release Date

2016-06-29

Peptides

RNA-directed RNA polymerase L: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA-directed RNA polymerase L

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