SMTL ID : 5j49.1

Crystal structure of UDP-glucose pyrophosporylase / UTP-glucose-1-phosphate uridylyltransferase from Burkholderia xenovorans

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

10 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: G.21, L.22, G.23, T.24, K.35 Chain C: R.89 9 PLIP interactions: 6 interactions with chain A, 3 interactions with chain C Hydrogen bonds: A:L.22, A:G.23, A:T.24 Water bridges: A:R.25, A:R.25, C:R.89, C:R.89 Salt bridges: A:K.35, C:R.89 SO4.2: 6 residues within 4Å: Chain A: R.25, S.266, K.267, L.268 Chain C: E.283, V.284 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.267, A:L.268 Salt bridges: A:K.267 SO4.3: 5 residues within 4Å: Chain A: D.132, N.133 Chain B: D.132, N.133 Ligands: EDO.4 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:D.132, A:N.133, B:D.132, B:N.133 SO4.5: 6 residues within 4Å: Chain B: G.21, L.22, G.23, T.24, K.35 Chain D: R.89 11 PLIP interactions: 8 interactions with chain B, 3 interactions with chain D Hydrogen bonds: B:L.22, B:G.23, B:T.24, B:R.25 Water bridges: B:T.24, B:K.35, B:K.35, D:R.89, D:R.89 Salt bridges: B:K.35, D:R.89 SO4.6: 6 residues within 4Å: Chain B: R.25, S.266, K.267, L.268 Chain D: E.283, V.284 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain D Hydrogen bonds: B:K.267, B:L.268, D:E.283 SO4.7: 6 residues within 4Å: Chain A: R.89 Chain C: G.21, L.22, G.23, T.24, K.35 9 PLIP interactions: 6 interactions with chain C, 3 interactions with chain A Hydrogen bonds: C:L.22, C:G.23, C:T.24 Water bridges: C:T.24, C:R.25, A:R.89, A:R.89 Salt bridges: C:K.35, A:R.89 SO4.8: 6 residues within 4Å: Chain A: E.283, V.284 Chain C: R.25, S.266, K.267, L.268 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:K.267, C:L.268, A:E.283 Salt bridges: C:K.267 SO4.9: 5 residues within 4Å: Chain C: D.132, N.133 Chain D: D.132, N.133 Ligands: EDO.10 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:D.132, C:N.133, D:D.132, D:N.133 SO4.11: 6 residues within 4Å: Chain B: R.89 Chain D: G.21, L.22, G.23, T.24, K.35 10 PLIP interactions: 7 interactions with chain D, 3 interactions with chain B Hydrogen bonds: D:L.22, D:G.23, D:T.24, D:R.25 Water bridges: D:K.35, D:K.35, B:R.89, B:R.89 Salt bridges: D:K.35, B:R.89 SO4.12: 6 residues within 4Å: Chain B: E.283, V.284 Chain D: R.25, S.266, K.267, L.268 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:K.267, D:L.268

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 9 residues within 4Å: Chain A: K.128, L.129, V.130, G.131, N.133 Chain B: K.128, L.129, G.131 Ligands: SO4.3 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:N.133, B:K.14, B:K.14 Water bridges: A:K.14, B:K.128, B:D.132 EDO.10: 9 residues within 4Å: Chain C: K.128, L.129, V.130, G.131, N.133 Chain D: K.128, L.129, G.131 Ligands: SO4.9 6 PLIP interactions: 4 interactions with chain D, 2 interactions with chain C Hydrogen bonds: D:K.14, D:K.14, C:N.133 Water bridges: D:K.128, D:D.132, C:K.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abendroth, J. et al., Crystal structure of UDP-glucose pyrophosporylase / UTP-glucose-1-phosphate uridylyltransferase from Burkholderia xenovorans. to be published

Release Date

2016-05-04

Peptides

UTP--glucose-1-phosphate uridylyltransferase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

UTP--glucose-1-phosphate uridylyltransferase