SMTL ID : 5j55.1

The Structure and Mechanism of NOV1, a Resveratrol-Cleaving Dioxygenase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x FE: FE (III) ION(Non-covalent)

FE.1: 6 residues within 4Å: Chain A: H.167, H.218, H.284, H.476 Ligands: OXY.2, V55.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.167, A:H.218, A:H.284, A:H.476

1 x OXY: OXYGEN MOLECULE(Non-covalent)

OXY.2: 7 residues within 4Å: Chain A: T.121, H.218, H.284, L.475, H.476 Ligands: FE.1, V55.3 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.283

1 x V55: 4-hydroxy-3-methoxybenzaldehyde(Non-covalent)

V55.3: 16 residues within 4Å: Chain A: P.45, F.59, Y.101, R.102, N.120, T.121, K.134, E.135, M.216, H.218, S.283, H.284, F.307, L.475 Ligands: FE.1, OXY.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.101, A:K.134 Water bridges: A:E.135 pi-Stacking: A:F.59

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.4: 5 residues within 4Å: Chain A: K.210, V.211, P.212, H.257, W.274 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McAndrew, R.P. et al., Structure and mechanism of NOV1, a resveratrol-cleaving dioxygenase. Proc. Natl. Acad. Sci. U.S.A. (2016)

Release Date

2016-11-30

Peptides

Carotenoid oxygenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Carotenoid oxygenase

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