- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.04 Å
- Oligo State
- homo-pentamer
- Ligands
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- 5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.2: 3 residues within 4Å:- Chain A: N.74, S.76, H.77
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.76
- Water bridges: A:N.74
NAG.7: 3 residues within 4Å:- Chain B: N.74, S.76, H.77
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.74, B:S.76, B:H.77
NAG.10: 3 residues within 4Å:- Chain C: N.74, S.76, H.77
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:N.74, C:S.76, C:H.77
NAG.13: 3 residues within 4Å:- Chain D: N.74, S.76, H.77
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:S.76, D:H.77
NAG.15: 3 residues within 4Å:- Chain E: N.74, S.76, H.77
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:N.74, E:S.76, E:H.77
- 5 x 6GH: N~4~,N~4~-bis[(pyridin-2-yl)methyl]-6-(thiophen-3-yl)pyrimidine-2,4-diamine(Non-covalent)
6GH.3: 14 residues within 4Å:- Chain A: Y.97, W.151, T.152, Y.193, C.195, C.196, Y.200
- Chain B: Q.63, T.64, T.65, R.112, L.120, M.122, Y.172
9 PLIP interactions:5 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: A:Y.97, A:T.152, A:Y.193, B:Q.63, B:R.112
- pi-Stacking: A:W.151, A:Y.200
- Hydrogen bonds: B:Y.172, B:Y.172
6GH.8: 15 residues within 4Å:- Chain B: Y.97, W.151, T.152, Y.193, C.195, C.196, Y.200
- Chain C: W.61, Q.63, T.64, T.65, R.112, L.120, M.122, Y.172
11 PLIP interactions:6 interactions with chain B, 5 interactions with chain C- Hydrophobic interactions: B:Y.97, B:T.152, B:Y.193, B:Y.200, C:W.61, C:Q.63, C:R.112, C:M.122
- pi-Stacking: B:W.151
- pi-Cation interactions: B:Y.193
- Hydrogen bonds: C:Y.172
6GH.11: 14 residues within 4Å:- Chain C: Y.97, W.151, T.152, Y.193, C.195, C.196, Y.200
- Chain D: Q.63, T.64, T.65, R.112, L.120, M.122, Y.172
8 PLIP interactions:5 interactions with chain C, 3 interactions with chain D- Hydrophobic interactions: C:Y.97, C:T.152, C:Y.193, C:Y.200, D:Q.63, D:R.112
- pi-Stacking: C:W.151
- Hydrogen bonds: D:Y.172
6GH.14: 14 residues within 4Å:- Chain D: Y.97, W.151, T.152, Y.193, C.195, C.196, Y.200
- Chain E: Q.63, T.64, T.65, R.112, L.120, M.122, Y.172
9 PLIP interactions:4 interactions with chain E, 5 interactions with chain D- Hydrophobic interactions: E:Q.63, E:R.112, E:M.122, D:Y.97, D:T.152, D:Y.193, D:Y.200
- Hydrogen bonds: E:Y.172
- pi-Stacking: D:W.151
6GH.16: 14 residues within 4Å:- Chain A: Q.63, T.64, T.65, R.112, L.120, M.122, Y.172
- Chain E: Y.97, W.151, T.152, Y.193, C.195, C.196, Y.200
10 PLIP interactions:5 interactions with chain A, 5 interactions with chain E- Hydrophobic interactions: A:Q.63, A:R.112, A:L.120, A:M.122, E:Y.97, E:T.152, E:Y.193, E:Y.200
- Hydrogen bonds: A:Y.172
- pi-Stacking: E:W.151
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kaczanowska, K. et al., Substituted 2-Aminopyrimidines Selective for alpha 7-Nicotinic Acetylcholine Receptor Activation and Association with Acetylcholine Binding Proteins. J. Am. Chem. Soc. (2017)
- Release Date
- 2017-03-08
- Peptides
- Acetylcholine-binding protein: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.04 Å
- Oligo State
- homo-pentamer
- Ligands
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- 5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 5 x 6GH: N~4~,N~4~-bis[(pyridin-2-yl)methyl]-6-(thiophen-3-yl)pyrimidine-2,4-diamine(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kaczanowska, K. et al., Substituted 2-Aminopyrimidines Selective for alpha 7-Nicotinic Acetylcholine Receptor Activation and Association with Acetylcholine Binding Proteins. J. Am. Chem. Soc. (2017)
- Release Date
- 2017-03-08
- Peptides
- Acetylcholine-binding protein: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E