- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.04 Å
- Oligo State
- homo-pentamer
- Ligands
- 5 x PO4: PHOSPHATE ION(Non-functional Binders)
- 5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.3: 3 residues within 4Å:- Chain A: N.74, S.76, H.77
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.76, A:H.77
- Water bridges: A:H.77
NAG.5: 3 residues within 4Å:- Chain B: N.74, S.76, H.77
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.74, B:S.76, B:H.77
NAG.8: 3 residues within 4Å:- Chain C: N.74, S.76, H.77
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:S.76
NAG.11: 3 residues within 4Å:- Chain D: N.74, S.76, H.77
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:S.76
- Water bridges: D:H.77
NAG.13: 3 residues within 4Å:- Chain E: N.74, S.76, H.77
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:N.74
- 5 x 6GF: 6-(4-methoxyphenyl)-N~4~,N~4~-bis[(pyridin-2-yl)methyl]pyrimidine-2,4-diamine(Non-covalent)
6GF.4: 16 residues within 4Å:- Chain A: Y.97, W.151, T.152, Y.193, C.195, C.196, Y.200
- Chain B: S.38, Q.63, T.64, T.65, R.112, L.120, M.122, T.163, Y.172
9 PLIP interactions:4 interactions with chain A, 5 interactions with chain B- Hydrophobic interactions: A:T.152, A:Y.193, A:Y.200, B:Q.63, B:R.112, B:L.120, B:M.122
- pi-Stacking: A:W.151
- Hydrogen bonds: B:Y.172
6GF.9: 15 residues within 4Å:- Chain B: Y.97, W.151, T.152, Y.193, C.195, C.196, Y.200
- Chain C: Q.63, T.64, T.65, R.112, L.120, M.122, T.163, Y.172
9 PLIP interactions:5 interactions with chain C, 4 interactions with chain B- Hydrophobic interactions: C:Q.63, C:R.112, C:L.120, C:M.122, B:T.152, B:Y.193, B:Y.200
- Hydrogen bonds: C:Y.172
- pi-Stacking: B:W.151
6GF.10: 15 residues within 4Å:- Chain C: Y.97, W.151, T.152, Y.193, C.195, C.196, Y.200
- Chain D: S.38, Q.63, T.64, T.65, R.112, L.120, M.122, Y.172
9 PLIP interactions:6 interactions with chain D, 3 interactions with chain C- Hydrophobic interactions: D:Q.63, D:Q.63, D:R.112, D:L.120, D:M.122, C:Y.193
- Hydrogen bonds: D:Y.172
- pi-Stacking: C:W.151, C:Y.200
6GF.14: 16 residues within 4Å:- Chain D: Y.97, W.151, T.152, Y.193, C.195, C.196, Y.200
- Chain E: S.38, Q.63, T.64, T.65, R.112, L.120, M.122, T.163, Y.172
11 PLIP interactions:6 interactions with chain E, 5 interactions with chain D- Hydrophobic interactions: E:Q.63, E:Q.63, E:R.112, E:L.120, D:Y.97, D:T.152, D:Y.193, D:Y.200
- Hydrogen bonds: E:Y.172, E:Y.172
- pi-Stacking: D:W.151
6GF.15: 15 residues within 4Å:- Chain A: Q.63, T.64, T.65, R.112, L.120, M.122, T.163, Y.172
- Chain E: Y.97, W.151, T.152, Y.193, C.195, C.196, Y.200
11 PLIP interactions:6 interactions with chain A, 5 interactions with chain E- Hydrophobic interactions: A:Q.63, A:Q.63, A:R.112, A:L.120, A:M.122, E:Y.97, E:T.152, E:Y.193, E:Y.200
- Hydrogen bonds: A:Y.172
- pi-Stacking: E:W.151
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kaczanowska, K. et al., Substituted 2-Aminopyrimidines Selective for alpha 7-Nicotinic Acetylcholine Receptor Activation and Association with Acetylcholine Binding Proteins. J. Am. Chem. Soc. (2017)
- Release Date
- 2017-03-08
- Peptides
- Acetylcholine-binding protein: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.04 Å
- Oligo State
- homo-pentamer
- Ligands
- 5 x PO4: PHOSPHATE ION(Non-functional Binders)
- 5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 5 x 6GF: 6-(4-methoxyphenyl)-N~4~,N~4~-bis[(pyridin-2-yl)methyl]pyrimidine-2,4-diamine(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kaczanowska, K. et al., Substituted 2-Aminopyrimidines Selective for alpha 7-Nicotinic Acetylcholine Receptor Activation and Association with Acetylcholine Binding Proteins. J. Am. Chem. Soc. (2017)
- Release Date
- 2017-03-08
- Peptides
- Acetylcholine-binding protein: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E