- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.33 Å
- Oligo State
- homo-pentamer
- Ligands
- 5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 5 x 6GM: 4-(2-amino-6-{bis[(pyridin-2-yl)methyl]amino}pyrimidin-4-yl)phenol(Non-covalent)
6GM.2: 14 residues within 4Å:- Chain A: Y.97, W.151, T.152, Y.193, C.195, C.196, Y.200
- Chain B: Q.63, T.64, T.65, R.112, L.120, M.122, Y.172
12 PLIP interactions:5 interactions with chain A, 7 interactions with chain B- Hydrophobic interactions: A:Y.97, A:T.152, A:Y.193, B:Q.63, B:Q.63, B:R.112, B:L.120
- pi-Stacking: A:W.151, A:Y.200
- Hydrogen bonds: B:Q.63, B:T.64, B:Y.172
6GM.3: 13 residues within 4Å:- Chain A: Q.63, T.64, T.65, R.112, L.120, M.122, Y.172
- Chain E: Y.97, W.151, Y.193, C.195, C.196, Y.200
12 PLIP interactions:7 interactions with chain A, 5 interactions with chain E- Hydrophobic interactions: A:Q.63, A:T.65, A:R.112, A:L.120, A:M.122, E:Y.97, E:Y.193, E:Y.200
- Hydrogen bonds: A:T.64, A:Y.172
- pi-Stacking: E:W.151, E:Y.200
6GM.6: 13 residues within 4Å:- Chain B: Y.97, W.151, Y.193, C.195, C.196, Y.200
- Chain C: Q.63, T.64, T.65, R.112, L.120, M.122, Y.172
10 PLIP interactions:4 interactions with chain B, 6 interactions with chain C- Hydrophobic interactions: B:Y.97, B:Y.193, C:Q.63, C:R.112, C:L.120, C:M.122
- pi-Stacking: B:W.151, B:Y.200
- Hydrogen bonds: C:T.64, C:Y.172
6GM.9: 14 residues within 4Å:- Chain C: Y.97, W.151, T.152, Y.193, C.195, C.196, Y.200
- Chain D: Q.63, T.64, T.65, R.112, L.120, M.122, Y.172
10 PLIP interactions:6 interactions with chain D, 4 interactions with chain C- Hydrophobic interactions: D:Q.63, D:R.112, D:L.120, D:M.122, C:T.152, C:Y.193, C:Y.200
- Hydrogen bonds: D:T.64, D:Y.172
- pi-Stacking: C:W.151
6GM.18: 14 residues within 4Å:- Chain D: Y.97, W.151, T.152, Y.193, C.195, C.196, Y.200
- Chain E: Q.63, T.64, T.65, R.112, L.120, M.122, Y.172
13 PLIP interactions:6 interactions with chain D, 7 interactions with chain E- Hydrophobic interactions: D:Y.97, D:Y.97, D:T.152, D:Y.193, E:Q.63, E:R.112, E:L.120, E:M.122
- pi-Stacking: D:W.151, D:Y.200
- Hydrogen bonds: E:T.64, E:Y.172, E:Y.172
- 10 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.4: 7 residues within 4Å:- Chain A: R.11, V.82, S.83
- Chain E: D.25, V.26, I.27, H.153
6 PLIP interactions:4 interactions with chain A, 2 interactions with chain E- Hydrogen bonds: A:S.83, A:S.83, A:S.83, E:I.27
- Salt bridges: A:R.11, E:H.153
PO4.7: 7 residues within 4Å:- Chain A: D.25, V.26, I.27, H.153
- Chain B: R.11, V.82, S.83
6 PLIP interactions:4 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:S.83, B:S.83, B:S.83, A:I.27
- Salt bridges: B:R.11, A:H.153
PO4.10: 7 residues within 4Å:- Chain B: D.25, V.26, I.27, H.153
- Chain C: R.11, V.82, S.83
6 PLIP interactions:4 interactions with chain C, 2 interactions with chain B- Hydrogen bonds: C:S.83, C:S.83, C:R.112, B:I.27
- Salt bridges: C:R.11, B:H.153
PO4.11: 5 residues within 4Å:- Chain C: S.170, E.171, Y.172, F.173, Q.175
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:F.173, C:Q.175
PO4.13: 7 residues within 4Å:- Chain D: D.25, V.26, I.27, H.153
- Chain E: R.11, V.82, S.83
6 PLIP interactions:4 interactions with chain E, 2 interactions with chain D- Hydrogen bonds: E:S.83, E:S.83, E:S.83, D:I.27
- Salt bridges: E:R.11, D:H.153
PO4.14: 7 residues within 4Å:- Chain C: D.25, V.26, I.27, H.153
- Chain D: R.11, V.82, S.83
5 PLIP interactions:3 interactions with chain D, 2 interactions with chain C- Hydrogen bonds: D:S.83, D:S.83, C:I.27
- Salt bridges: D:R.11, C:H.153
PO4.15: 2 residues within 4Å:- Chain D: E.139, R.210
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:E.139
- Salt bridges: D:R.210
PO4.16: 3 residues within 4Å:- Chain D: D.1, D.4, H.77
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:D.1, D:D.4
- Salt bridges: D:H.77
PO4.19: 4 residues within 4Å:- Chain E: V.49, D.137, F.179, K.211
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:D.137
- Salt bridges: E:K.211
PO4.20: 3 residues within 4Å:- Chain E: D.1, D.4, H.77
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:D.4, E:D.4
- Salt bridges: E:H.77
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kaczanowska, K. et al., Substituted 2-Aminopyrimidines Selective for alpha 7-Nicotinic Acetylcholine Receptor Activation and Association with Acetylcholine Binding Proteins. J. Am. Chem. Soc. (2017)
- Release Date
- 2017-03-08
- Peptides
- Acetylcholine-binding protein: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.33 Å
- Oligo State
- homo-pentamer
- Ligands
- 5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 5 x 6GM: 4-(2-amino-6-{bis[(pyridin-2-yl)methyl]amino}pyrimidin-4-yl)phenol(Non-covalent)
- 10 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kaczanowska, K. et al., Substituted 2-Aminopyrimidines Selective for alpha 7-Nicotinic Acetylcholine Receptor Activation and Association with Acetylcholine Binding Proteins. J. Am. Chem. Soc. (2017)
- Release Date
- 2017-03-08
- Peptides
- Acetylcholine-binding protein: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E