SMTL ID : 5j5o.4 (3 other biounits)

Translation initiation factor 4E in complex with m7GppppG mRNA 5' cap analog

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

monomer

Ligands

1 x 6G0: 5'-O-[(R)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]-7-methylguanosine(Non-covalent)

6G0.1: 6 residues within 4Å: Chain A: W.29, M.74, W.75, E.76, R.130, K.135 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:W.75, A:N.128 Salt bridges: A:E.76, A:R.130, A:R.130, A:K.135, A:K.135, A:K.135 pi-Stacking: A:W.29, A:W.29, A:W.29 pi-Cation interactions: A:W.29

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rydzik, A.M. et al., mRNA cap analogues substituted in the tetraphosphate chain with CX2: identification of O-to-CCl2 as the first bridging modification that confers resistance to decapping without impairing translation. Nucleic Acids Res. (2017)

Release Date

2017-05-10

Peptides

Eukaryotic translation initiation factor 4E: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Eukaryotic translation initiation factor 4E

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