SMTL ID : 5j5y.2 (3 other biounits)

Translation initiation factor 4E in complex with m2(7,2'O)GppCCl2ppG mRNA 5' cap analog

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x 6G6: 2-amino-9-{5-O-[(R)-{[(S)-{dichloro[(R)-hydroxy(phosphonooxy)phosphoryl]methyl}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-2-O-methyl-beta-D-ribofuranosyl}-7-methyl-9H-purin-7-ium-6-olate(Non-covalent)

6G6.1: 6 residues within 4Å: Chain A: W.29, M.74, W.75, E.76, R.130, K.132 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:W.75, A:R.130 Water bridges: A:N.23, A:R.85, A:R.85, A:R.85, A:N.128, A:A.131, A:A.131, A:K.135 Salt bridges: A:E.76, A:R.130, A:K.132 pi-Stacking: A:W.29, A:W.29, A:W.29, A:W.75, A:W.75

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: N.14, K.68, I.71, D.120, V.122 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.14, A:K.68, A:V.122

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rydzik, A.M. et al., mRNA cap analogues substituted in the tetraphosphate chain with CX2: identification of O-to-CCl2 as the first bridging modification that confers resistance to decapping without impairing translation. Nucleic Acids Res. (2017)

Release Date

2017-05-10

Peptides

Eukaryotic translation initiation factor 4E: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Eukaryotic translation initiation factor 4E

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