SMTL ID : 5j72.1 (1 other biounit)

Cwp6 from Clostridium difficile

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 2 residues within 4Å: Chain A: N.6, D.181 No protein-ligand interaction detected (PLIP) CA.2: 3 residues within 4Å: Chain A: S.329, K.330, A.332 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.329, A:A.332, H2O.8

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 7 residues within 4Å: Chain A: L.407, S.408, K.410, S.433, L.434, K.436, A.439 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.433

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 6 residues within 4Å: Chain A: R.9, K.10, S.11, Q.150, L.387, Y.416 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: R.593, N.594 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: Q.8, R.9, K.17 Ligand excluded by PLIP

1 x ZN: ZINC ION(Non-covalent)

ZN.7: 3 residues within 4Å: Chain A: H.460, E.477, H.530 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.460, A:E.477, A:H.530, H2O.5, H2O.17, H2O.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Usenik, A. et al., The CWB2 Cell Wall-Anchoring Module Is Revealed by the Crystal Structures of the Clostridium difficile Cell Wall Proteins Cwp8 and Cwp6. Structure (2017)

Release Date

2017-02-08

Peptides

Putative N-acetylmuramoyl-L-alanine amidase,autolysin cwp6: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative N-acetylmuramoyl-L-alanine amidase,autolysin cwp6

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