SMTL ID : 5jae.2 (1 other biounit)

LeuT in the outward-oriented, Na+-free return state, P21 form at pH 6.5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

7 x BOG: octyl beta-D-glucopyranoside(Non-covalent)(Post Translational Modification)

BOG.1: 7 residues within 4Å: Chain A: K.163, P.164, L.166, Y.169, F.388, H.391, F.395 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.388 Hydrogen bonds: A:P.164 BOG.2: 3 residues within 4Å: Chain A: K.163, H.391, F.395 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.395, A:F.395, A:F.395 BOG.3: 5 residues within 4Å: Chain A: I.120, L.166, F.167, I.170 Ligands: BOG.7 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.120, A:I.170 Hydrogen bonds: A:F.167 BOG.4: 12 residues within 4Å: Chain A: R.30, V.33, Y.107, Y.108, I.111, G.318, A.319, F.320, L.400, D.401, D.404, T.409 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.107, A:Y.108, A:I.111, A:F.320, A:F.320, A:L.400 Hydrogen bonds: A:R.30, A:A.319, A:F.320, A:D.404, A:T.409 BOG.5: 3 residues within 4Å: Chain A: L.380, W.381, A.384 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.380, A:W.381, A:W.381, A:A.384 BOG.6: 1 residues within 4Å: Chain A: W.484 No protein-ligand interaction detected (PLIP) BOG.7: 5 residues within 4Å: Chain A: K.121, V.124, L.126, F.167 Ligands: BOG.3 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.124 Hydrogen bonds: A:K.121, A:K.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Malinauskaite, L. et al., A conserved leucine occupies the empty substrate site of LeuT in the Na(+)-free return state. Nat Commun (2016)

Release Date

2016-06-01

Peptides

Transporter: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Membrane

We predict this structure to be a membrane protein.
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Transporter

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