SMTL ID : 5jam.1

Yersinia pestis FabV variant T276V

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)

NAI.1: 30 residues within 4Å: Chain A: G.55, A.56, S.57, T.58, G.59, Y.60, G.61, V.79, F.80, F.81, E.82, G.117, D.118, A.119, F.120, S.145, L.146, A.147, S.148, F.230, T.231, Y.232, K.251, L.278, K.279, A.280, V.281, V.283, Q.284 Ligands: DMS.4 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:Y.60, A:Y.232, A:L.278 Hydrogen bonds: A:S.57, A:S.57, A:S.57, A:T.58, A:T.58, A:Y.60, A:F.81, A:E.82, A:D.118, A:A.119, A:L.146, A:A.147, A:K.251, A:V.281, A:V.281, A:Q.284 Water bridges: A:G.61, A:S.148, A:Q.284, A:Q.284

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 5 residues within 4Å: Chain A: K.113, Q.134, N.402, L.403, I.404 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.113, A:N.402 DMS.3: 5 residues within 4Å: Chain A: K.33, N.379, G.384, I.385, D.386 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.386 Salt bridges: A:D.386 DMS.4: 6 residues within 4Å: Chain A: Y.232, Y.242, A.280, V.283, M.292 Ligands: NAI.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Neckles, C. et al., Selectivity of Pyridone- and Diphenyl Ether-Based Inhibitors for the Yersinia pestis FabV Enoyl-ACP Reductase. Biochemistry (2016)

Release Date

2016-05-25

Peptides

Enoyl-[acyl-carrier-protein] reductase [NADH]: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Enoyl-[acyl-carrier-protein] reductase [NADH]