SMTL ID : 5jbn.1

Crystal Structure of Apo Phosphopantetheine Adenylyltransferase (PPAT/CoaD) from E. coli

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

homo-hexamer

Ligands

18 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: S.124, K.125 Chain B: H.107, R.110 Ligand excluded by PLIP SO4.2: 4 residues within 4Å: Chain A: H.21, R.94, S.131, S.132 Ligand excluded by PLIP SO4.3: 7 residues within 4Å: Chain A: A.40, F.73, D.75, L.76, M.77 Chain E: E.137, H.141 Ligand excluded by PLIP SO4.5: 4 residues within 4Å: Chain A: R.110 Chain B: R.27, S.124, K.125 Ligand excluded by PLIP SO4.6: 5 residues within 4Å: Chain B: R.140, H.141 Chain F: S.42, P.43, S.44 Ligand excluded by PLIP SO4.7: 3 residues within 4Å: Chain B: H.21, S.131, S.132 Ligand excluded by PLIP SO4.8: 4 residues within 4Å: Chain C: S.124, K.125 Chain D: H.107, R.110 Ligand excluded by PLIP SO4.9: 4 residues within 4Å: Chain C: H.21, R.94, S.131, S.132 Ligand excluded by PLIP SO4.10: 7 residues within 4Å: Chain A: E.137, H.141 Chain C: A.40, F.73, D.75, L.76, M.77 Ligand excluded by PLIP SO4.12: 4 residues within 4Å: Chain C: R.110 Chain D: R.27, S.124, K.125 Ligand excluded by PLIP SO4.13: 5 residues within 4Å: Chain B: S.42, P.43, S.44 Chain D: R.140, H.141 Ligand excluded by PLIP SO4.14: 3 residues within 4Å: Chain D: H.21, S.131, S.132 Ligand excluded by PLIP SO4.15: 4 residues within 4Å: Chain E: S.124, K.125 Chain F: H.107, R.110 Ligand excluded by PLIP SO4.16: 4 residues within 4Å: Chain E: H.21, R.94, S.131, S.132 Ligand excluded by PLIP SO4.17: 7 residues within 4Å: Chain C: E.137, H.141 Chain E: A.40, F.73, D.75, L.76, M.77 Ligand excluded by PLIP SO4.19: 4 residues within 4Å: Chain E: R.110 Chain F: R.27, S.124, K.125 Ligand excluded by PLIP SO4.20: 5 residues within 4Å: Chain D: S.42, P.43, S.44 Chain F: R.140, H.141 Ligand excluded by PLIP SO4.21: 3 residues within 4Å: Chain F: H.21, S.131, S.132 Ligand excluded by PLIP

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 3 residues within 4Å: Chain A: D.144, H.147 Chain C: H.111 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:D.144 DMS.11: 3 residues within 4Å: Chain C: D.144, H.147 Chain E: H.111 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:D.144 DMS.18: 3 residues within 4Å: Chain A: H.111 Chain E: D.144, H.147 2 PLIP interactions: 2 interactions with chain E Water bridges: E:D.144 Salt bridges: E:D.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Proudfoot, A. et al., Facilitating unambiguous NMR assignments and enabling higher probe density through selective labeling of all methyl containing amino acids. J.Biomol.Nmr (2016)

Release Date

2016-05-25

Peptides

Phosphopantetheine adenylyltransferase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Phosphopantetheine adenylyltransferase