SMTL ID : 5jdt.1

Structure of Spin-labelled T4 lysozyme mutant L118C-R1 at 100K

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.00 Å

Oligo State

monomer

Ligands

1 x MTN: S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate(Non-covalent)

MTN.1: 11 residues within 4Å: Chain A: N.81, L.84, L.99, M.102, V.103, M.106, V.111, G.113, F.114, T.115, C.118 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.99, A:V.111, A:F.114, A:F.114

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: S.44, E.45, K.48 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: T.142, P.143, N.144, R.145 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: M.120, V.131, N.132, K.135 Ligand excluded by PLIP

1 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.5: 4 residues within 4Å: Chain A: I.3, V.75, Y.88, I.100 No protein-ligand interaction detected (PLIP)

2 x AZI: AZIDE ION(Non-functional Binders)(Non-covalent)

AZI.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) AZI.7: 4 residues within 4Å: Chain A: R.125, W.126, D.127, E.128 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.125, A:W.126, A:D.127, A:E.128

1 x K: POTASSIUM ION(Non-covalent)

K.8: 3 residues within 4Å: Chain A: E.11, Y.18, G.30 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.11, A:Y.18, H2O.2, H2O.4, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Consentius, P. et al., Tracking Transient Conformational States of T4 Lysozyme at Room Temperature Combining X-ray Crystallography and Site-Directed Spin Labeling. J.Am.Chem.Soc. (2016)

Release Date

2016-09-28

Peptides

Endolysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endolysin

Related Entries With Identical Sequence