- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-12-mer
- Ligands
- 24 x ZN: ZINC ION(Non-covalent)
- 24 x CAC: CACODYLATE ION(Non-covalent)
CAC.3: 11 residues within 4Å:- Chain A: H.134, D.305, E.341, E.342, D.387, G.456, T.457, H.481
- Chain B: H.212
- Ligands: ZN.1, ZN.2
Ligand excluded by PLIPCAC.4: 5 residues within 4Å:- Chain A: P.216, E.218, P.220, F.221, Q.226
Ligand excluded by PLIPCAC.7: 11 residues within 4Å:- Chain A: H.212
- Chain B: H.134, D.305, E.341, E.342, D.387, G.456, T.457, H.481
- Ligands: ZN.5, ZN.6
Ligand excluded by PLIPCAC.8: 6 residues within 4Å:- Chain B: K.215, P.216, E.218, P.220, F.221, Q.226
Ligand excluded by PLIPCAC.11: 11 residues within 4Å:- Chain C: H.134, D.305, E.341, E.342, D.387, G.456, T.457, H.481
- Chain D: H.212
- Ligands: ZN.9, ZN.10
Ligand excluded by PLIPCAC.12: 6 residues within 4Å:- Chain C: K.215, P.216, E.218, P.220, F.221, Q.226
Ligand excluded by PLIPCAC.15: 11 residues within 4Å:- Chain C: H.212
- Chain D: H.134, D.305, E.341, E.342, D.387, G.456, T.457, H.481
- Ligands: ZN.13, ZN.14
Ligand excluded by PLIPCAC.16: 6 residues within 4Å:- Chain D: K.215, P.216, E.218, P.220, F.221, Q.226
Ligand excluded by PLIPCAC.19: 11 residues within 4Å:- Chain E: H.134, D.305, E.341, E.342, D.387, G.456, T.457, H.481
- Chain F: H.212
- Ligands: ZN.17, ZN.18
Ligand excluded by PLIPCAC.20: 5 residues within 4Å:- Chain E: P.216, E.218, P.220, F.221, Q.226
Ligand excluded by PLIPCAC.23: 11 residues within 4Å:- Chain E: H.212
- Chain F: H.134, D.305, E.341, E.342, D.387, G.456, T.457, H.481
- Ligands: ZN.21, ZN.22
Ligand excluded by PLIPCAC.24: 6 residues within 4Å:- Chain F: K.215, P.216, E.218, P.220, F.221, Q.226
Ligand excluded by PLIPCAC.27: 11 residues within 4Å:- Chain G: H.134, D.305, E.341, E.342, D.387, G.456, T.457, H.481
- Chain H: H.212
- Ligands: ZN.25, ZN.26
Ligand excluded by PLIPCAC.28: 6 residues within 4Å:- Chain G: K.215, P.216, E.218, P.220, F.221, Q.226
Ligand excluded by PLIPCAC.31: 11 residues within 4Å:- Chain G: H.212
- Chain H: H.134, D.305, E.341, E.342, D.387, G.456, T.457, H.481
- Ligands: ZN.29, ZN.30
Ligand excluded by PLIPCAC.32: 6 residues within 4Å:- Chain H: K.215, P.216, E.218, P.220, F.221, Q.226
Ligand excluded by PLIPCAC.35: 11 residues within 4Å:- Chain I: H.134, D.305, E.341, E.342, D.387, G.456, T.457, H.481
- Chain J: H.212
- Ligands: ZN.33, ZN.34
Ligand excluded by PLIPCAC.36: 5 residues within 4Å:- Chain I: P.216, E.218, P.220, F.221, Q.226
Ligand excluded by PLIPCAC.39: 11 residues within 4Å:- Chain I: H.212
- Chain J: H.134, D.305, E.341, E.342, D.387, G.456, T.457, H.481
- Ligands: ZN.37, ZN.38
Ligand excluded by PLIPCAC.40: 6 residues within 4Å:- Chain J: K.215, P.216, E.218, P.220, F.221, Q.226
Ligand excluded by PLIPCAC.43: 11 residues within 4Å:- Chain K: H.134, D.305, E.341, E.342, D.387, G.456, T.457, H.481
- Chain L: H.212
- Ligands: ZN.41, ZN.42
Ligand excluded by PLIPCAC.44: 6 residues within 4Å:- Chain K: K.215, P.216, E.218, P.220, F.221, Q.226
Ligand excluded by PLIPCAC.47: 11 residues within 4Å:- Chain K: H.212
- Chain L: H.134, D.305, E.341, E.342, D.387, G.456, T.457, H.481
- Ligands: ZN.45, ZN.46
Ligand excluded by PLIPCAC.48: 6 residues within 4Å:- Chain L: K.215, P.216, E.218, P.220, F.221, Q.226
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yamasaki, A. et al., Structural Basis for Receptor-Mediated Selective Autophagy of Aminopeptidase I Aggregates. Cell Rep (2016)
- Release Date
- 2016-06-29
- Peptides
- Vacuolar aminopeptidase 1: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
AF
BG
CH
DI
AJ
BK
CL
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-12-mer
- Ligands
- 24 x ZN: ZINC ION(Non-covalent)
- 24 x CAC: CACODYLATE ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yamasaki, A. et al., Structural Basis for Receptor-Mediated Selective Autophagy of Aminopeptidase I Aggregates. Cell Rep (2016)
- Release Date
- 2016-06-29
- Peptides
- Vacuolar aminopeptidase 1: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
AF
BG
CH
DI
AJ
BK
CL
D